Re: [galaxy-dev] makeblastdb wrapper
On Mon, Jul 16, 2012 at 7:07 PM, Peter Cock <p.j.a.cock(a)googlemail.com> wrote:
On Mon, Jul 16, 2012 at 6:10 PM, Espin, Almudena
<a.p.almudena(a)cranfield.ac.uk> wrote:
>
> Hi guys,
> I am writing a wrapper for makeblastdb. The problem is that
> Galaxy doesn’t support the blastdb data format, so this has
> to be added if a makeblastdb wrapper is to work properly.
> I have problems modifying the registry.py, Could anyone
> specify which changes have to be done?
> Thank you
I'm already trying to merge Edward Kirton's patches which
implement this - I'm on holiday at the moment though.
Peter
P.S. My branch is here - not really finished yet:
https://bitbucket.org/peterjc/galaxy-central/src/blastdb
I moved those changes to a more recent branch with some
other BLAST work, and updated my open pull request:
https://bitbucket.org/peterjc/galaxy-central/src/blast_tweaks
https://bitbucket.org/galaxy/galaxy-central/pull-request/48
Assuming no major problems that I've missed, this could
be in the next Galaxy release.
Peter