Dear all
For each bam file in my history I can download the associated bai (bam index) file.
I assume these files are stored somewhere under /mount/galaxy/database/files/_metadata_files. Correct? Is there an easy way to find the bam index file for a bam file, given only the internal file name of the bam (e.g. /mont/galaxy/database/files/089/dataset_89231.dat)?
I am asking because I would like to use the files_to_ftp tool to automatically download bams together with their associated indices.
Thanks Ulf
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