Hi Jeremy,
I just updated to the newest galaxy-dist and the export of the workflow still does not work. The error is the same.
Best regards, Sarah
On 04/07/2011 03:37 PM, Jeremy Goecks wrote:
Hi Sarah,
I created your workflow on my Galaxy instance and was able to export it successfully, so updating your Galaxy instance may solve your problem. If not, let us know and we'll take a closer look.
Finally, please direct your questions to one of our mailing lists rather than individual galaxy developers for community and archival purposes; I've cc'd this one to galaxy-dev.
Thanks, J.
On Apr 7, 2011, at 8:00 AM, Sarah Diehl wrote:
Hi Jeremy,
I encounter a similar error like the one already posted on the galaxy-dev list (http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-November/003699.html) when trying to download a workflow.
Were you able to find a solution or are you still working on it? I attached a screenshot of the workflow (like you also requested on the list). Let me know if I can provide you with any additional details to help with the debugging.
Best regards, Sarah
10.1.5.190 - - [07/Apr/2011:13:33:42 +0200] "GET /workflow/export_to_file?id=0ac5da8467dc9e07 HTTP/1.1" 500 - "http://solweb2.immunbio.mpg.de/workflow/export?id=0ac5da8467dc9e07" "Mozilla/5.0 (X11; U; Linux x86_64; en-US; rv:1.9.2.16) Gecko/20110322 fil
e:///home/diehl/Pictures/Screenshot.png
Fedora/3.6.16-1.fc14 Firefox/3.6.16" Error -<type 'exceptions.TypeError'>: 'WorkflowStep' object is unsubscriptable URL: http://solweb2.immunbio.mpg.de/workflow/export_to_file?id=0ac5da8467dc9e07 File '/galaxy/galaxy_server/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py', line 143 in __call__ app_iter = self.application(environ, start_response) File '/galaxy/galaxy_server/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__ return self.application(environ, start_response) File '/galaxy/galaxy_server/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__ return self.application(environ, start_response) File '/galaxy/galaxy_server/lib/galaxy/web/framework/base.py', line 145 in __call__ body = method( trans, **kwargs ) File '/galaxy/galaxy_server/lib/galaxy/web/framework/__init__.py', line 74 in decorator return simplejson.dumps( func( self, trans, *args, **kwargs ), indent=4, sort_keys=True ) File '/galaxy/galaxy_server/lib/galaxy/web/controllers/workflow.py', line 1078 in export_to_file stored_dict = self._workflow_to_dict( trans, stored ) File '/galaxy/galaxy_server/lib/galaxy/web/controllers/workflow.py', line 1571 in _workflow_to_dict step['inputs'].append( { "name" : name, "description" : "runtime parameter for tool %s" % module.get_name() } ) TypeError: 'WorkflowStep' object is unsubscriptable <Screenshot.png>
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