Hi Leandro,
I tested this on my instance and the example you gave did give me the correct string: Human (hg18). Do you still have this problem? If so, can you provide an example where it still behaves incorrectly?
Thanks,
K
On Thu, Jul 14, 2011 at 4:16 AM, Leandro Hermida <softdev@leandrohermida.com
wrote:
Hi,
Looking at the example on the Tool Config Syntax wiki page: Example
Assume that the tool includes an input parameter named "database" which is a select list ( e.g., assume the following inputs ): Toggle line numbershttp://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#
1 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-4197fe3d76b4282c0f9aa2576fbdec6550c3174f_1 <inputs> 2 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-4197fe3d76b4282c0f9aa2576fbdec6550c3174f_2 <param format="tabular" name="input" type="data" label="Input stuff"/> 3 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-4197fe3d76b4282c0f9aa2576fbdec6550c3174f_3 <param type="select" name="database" label="Database"> 4 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-4197fe3d76b4282c0f9aa2576fbdec6550c3174f_4 <option value="alignseq.loc">*Human (hg18)*</option> 5 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-4197fe3d76b4282c0f9aa2576fbdec6550c3174f_5 <option value="faseq.loc">Fly (dm3)</option> 6 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-4197fe3d76b4282c0f9aa2576fbdec6550c3174f_6 </param> 7 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-4197fe3d76b4282c0f9aa2576fbdec6550c3174f_7 </inputs>
Assume that the user selects the first option in the $database select list. Then the following will ensure that the tool produces a tabular data set whose associated history item has the label "Blat on *Human (hg18)*". Toggle line numbershttp://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#
1 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-c1ccb05e35e84df1d17f7b92455ff66b9d18618b_1 <outputs> 2 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-c1ccb05e35e84df1d17f7b92455ff66b9d18618b_2 <data format="input" name="output" label="Blat on ${database.value_label}" /> 3 http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#CA-c1ccb05e35e84df1d17f7b92455ff66b9d18618b_3 </outputs>
It shows that .value_label attribute should produce the string in between the <option> tags, not the actual value.
Why does this not work? When I use it it produces the value, or am I doing something wrong?
regards, Leandro
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