Hello Jim,
The last Galaxy release to the distribution does not include the latest Galaxy tool shed features, so the distribution is not current with the documentation in the tool shed wiki. To use the tool shed features as described in the wiki, you'll either have to pull from Galaxy central ( https://bitbucket.org/galaxy/galaxy-central ) or wait until the next release to the distribution, which should be within the next few weeks. We apologize for this inconvenience.
Greg Von Kuster
On Nov 3, 2011, at 8:23 AM, jjv5 wrote:
Hello,
I am getting a strange error in attempting to use the main Galaxy toolshed.
I am using the latest version:
galaxy@monolith:~/galaxy-dist$ hg pull -u -r 338ead4737ba pulling from https://bitbucket.org/galaxy/galaxy-dist/ searching for changes no changes found galaxy@monolith:~/galaxy-dist$
I have uncommented this toolshed line:
galaxy@monolith:~/galaxy-dist$ grep shed universe_wsgi.ini tool_config_file = tool_conf.xml,shed_tool_conf.xml
The shed_tool file is thus:
galaxy@monolith:~/galaxy-dist$ cat shed_tool_conf.xml
<?xml version="1.0"?>
<toolbox tool_path="../shed_tools"> </toolbox>
And
galaxy@monolith:~/galaxy-dist$ cat tool_sheds_conf.xml
<?xml version="1.0"?>
<tool_sheds> <tool_shed name="Galaxy main tool shed" url="http://toolshed.g2.bx.psu.edu/"/> <tool_shed name="Galaxy test tool shed" url="http://testtoolshed.g2.bx.psu.edu/"/> </tool_sheds>
When I log in as Admin, click Admin the Galaxy main tool shed (under Tool Sheds) I get this:
Not Found
The resource could not be found. No action for /browse_downloadable_repositories
I'm not sure where to go from here as I can find no info on this, but it looks like something tiny is messed up. Any help is appreciated.
Jim ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Greg Von Kuster Galaxy Development Team greg@bx.psu.edu