Hi Simon,
the Galaxy Docker Image is using Slurm you can look at it here:
https://github.com/bgruening/docker-galaxy-stable
Hope this helps, Bjoern
Am 15.10.2015 um 06:38 schrieb Simon Gladman:
Hi there all,
Has anyone had success setting up job_conf.xml for slurm based clusters? I am having trouble getting the GALAXY_SLOTS env var set for any jobs. I've tried looking at destinations in the job_conf.xml but can't get SLURM_NTASKS to be set correctly so the slurm run script can translate that into GALAXY_SLOTS..
Does anyone have a toy example of a job_conf.xml for slurm that they wouldn't mind sharing?
Cheers,
Simon.
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