I had forgotten that these migration scripts exist.
It should work better now. :)
--
Thomas Bellembois, Network and System Administrator, IGFL (France)
http://perso.ens-lyon.fr/thomas.bellembois - +33 4 26 73 13 67
(IGFL internal IT doc:
http://itdoc.igfl.ens-lyon.fr/itdoc)
On 09/09/2014 15:05, John Chilton wrote:
> Hello Thomas,
>
> After public debate on Trello, there have been a couple tools that
> have indeed disappeared completely but nearly all tools that have gone
> away have been migrated to the tool shed and can be recovered with the
> migration scripts that are included with each new release
> (
https://wiki.galaxyproject.org/MigratingToolsFromGalaxyDistribution).
> Are you running those scripts and still having those problems or were
> you not aware of these scripts?
>
> My understanding is that if you are running these scripts workflows
> and tool re-runs should continue to work. (Am I wrong about this?).
>
> If particular tools don't disappear but no longer work - this sounds
> like a bug and you should let the list or Trello know so that the
> devteam can attempt to fix the problem or at least be aware it exists.
>
> Hopefully at some point soon nearly all of the tools will be
> migrated out the core release and the devteam will provide some
> mechanism to quickly deploy complete say NGS packages all at once to
> new releases. Once everything is in the tool shed then hopefully these
> problems will go away. (There will be new problems of course - but
> hopefully updates will easier).
>
> -John
>
>
> On Tue, Sep 9, 2014 at 5:49 AM, Thomas Bellembois
>
thomas.bellembois@ens-lyon.fr wrote:
>> Hello,
>>
>> I try to keep our Galaxy instance up to date.
>> Very often, some tools disappear and other do not work anymore. This
>> breaks some users workflows.
>>
>> I may miss something. Is there a "best update pratice" to keep a Galaxy
>> instance and the tool-sheds fully functionnal ?
>>
>> Regards,
>>
>> Thomas
>>
>> --
>> Thomas Bellembois, Network and System Administrator, IGFL (France)
>>
http://perso.ens-lyon.fr/thomas.bellembois - +33 4 26 73 13 67
>> (IGFL internal IT doc:
http://itdoc.igfl.ens-lyon.fr/itdoc)
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