Olivia,
Is the parameter set to 'set at runtime' when you view the workflow in the editor? Could you send me the workflow json (just the http://127.0.0.1:8080/api/workflows/<workflow_id>/ bit)?
-Dannon
On Fri, Apr 25, 2014 at 5:26 AM, Olivia Doppelt-Azeroual < olivia.doppelt@pasteur.fr> wrote:
Dear Dannon,
Thank you for your answer, it works better now that I know the steps ID for my workflow.
I have another question though.
The second step of my WF uses a parameter input named "prefix". I really need to specify it when I launch the WF using the API.
When i display the WF using the url you gave me, the parameters prefix, is not there and when I use this in my command line, the specified Value is not read by Galaxy.
python workflow_execute_parameters.py 43359c833b8977b01d6237d9b839dc27 http://127.0.0.1:8080/api/workflows f2db41e1fa331b3e a799d38679e985db '10=hda=52ea4fd71e9f7c3f' 'param=export_sbw=prefix=test'
Could you help me on that ? How do I give a value to a parameter if it does not appear in the WF description ??
Thanks in advance,
Olivia
Le 23/04/14 18:40, Dannon Baker a écrit :
Hi Olivia!
It's probably talking about the "workflowstep" object with identifier 8. If you request the description of this workflow via the API ( http://yourgalaxyinstance.org/api/workflows/<the id of this workflow>"), you'll be given the exact step identifiers to use. In other words, unless this is the first workflow ever created on a brand new galaxy instance, your step ids will not be 0 and 1.
-Dannon
On Wed, Apr 23, 2014 at 12:30 PM, Olivia Doppelt-Azeroual < olivia.doppelt@pasteur.fr> wrote:
Dear developpers,
I'm trying to launch a small workflow using the api script workflow_execute_parameters.py
I have 2 steps: the input data step and a second step which needs a parameter called prefix.
The workflow is attached to this email.
I get an error on the parameters inputs which asks me to specify information about an 8th step (which does not exist)
Is there a test case available to use this script ?
Please keep me informed on that.
Have a nice day,
-- Olivia Doppelt-Azeroual, PhD Tel: 92 15 CIB - Institut Pasteur
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-- Olivia Doppelt-Azeroual, PhD Tel: 92 15 CIB - Institut Pasteur