Not sure why, but these tools fail to install inside the docker-galaxy-stable Dockerfile build:
indel_realigner unified_genotyper variant_select package_bedtools_2_19 bedtools
I'm getting errors like these when executing "RUN install-repository": ############ [....] Galaxy is running.
Processing: --url https://toolshed.g2.bx.psu.edu/ --name variant_filtration --revision da6e2503c62d --owner devteam
HTTP Error 500: Internal Server Error
{"err_msg": "Uncaught exception in exposed API method:", "err_code": 0}
2015/06/13 03:56:34 The command [/bin/sh -c install-repository "--url https://toolshed.g2.bx.psu.edu/ --name variant_filtration --revision da6e2503c62d --owner devteam"] returned a non-zero code: 1 ############
Any thoughts?
Cheers, -E
-- Evan F. Bollig, PhD Scientific Computing Consultant, Application Developer | Research and User Services (RUS) Supercomputing Institute for Advanced Computational Research | msi.umn.edu University of Minnesota | umn.edu boll0107@umn.edu | 612-624-1447 | Walter Lib Rm 556