Hans, I set the actual IP address and it works. Thanks, Iry On 8/24/12 8:07 AM, "Hans-Rudolf Hotz" <hrh@fmi.ch> wrote:
Hi Iry
- try different port - try the actual IP address of your host
Regards, Hans
On 08/24/2012 01:52 PM, Iry Witham wrote:
Hi Team,
I am attempting to get the reports interface for my galaxy server to function. I have my reports.wsgi.ini configured so:
# ---- HTTP Server ----------------------------------------------------------
[server:main]
use = egg:Paste#http port = 9001 host = 127.0.0.1 use_threadpool = true threadpool_workers = 10
# ---- Galaxy Webapps Report Interface -------------------------------------------------
[app:main]
# Specifies the factory for the universe WSGI application paste.app_factory = galaxy.webapps.reports.buildapp:app_factory log_level = DEBUG
# Database connection # Galaxy reports are intended for production Galaxy instances, so sqlite is not supported. # You may use a SQLAlchemy connection string to specify an external database. database_connection = postgres:///galaxy_1
# Where dataset files are saved file_path = database/files # Temporary storage for additional datasets, this should be shared through the cluster new_file_path = database/tmp
# Session support (beaker) use_beaker_session = True session_type = memory session_data_dir = %(here)s/database/beaker_sessions session_key = galaxysessions session_secret = changethisinproduction
# Configuration for debugging middleware # debug = true use_lint = false
# NEVER enable this on a public site (even test or QA) # use_interactive = true
# path to sendmail # sendmail_path = /usr/sbin/sendmail
# Address to join mailing list # mailing_join_addr = galaxy-user-join@bx.psu.edu <mailto:galaxy-user-join@bx.psu.edu>
# Write thread status periodically to 'heartbeat.log' (careful, uses disk space rapidly!) ## use_heartbeat = True
# Profiling middleware (cProfile based) ## use_profile = True
# Mail smtp_server = smtp.jax.org error_email_to = cbr-help@jax.org <mailto:cbr-help@jax.org>
# Use the new iframe / javascript based layout use_new_layout = true
# Serving static files (needed if running standalone) static_enabled = True static_cache_time = 360 static_dir = %(here)s/static/ static_images_dir = %(here)s/static/images static_favicon_dir = %(here)s/static/favicon.ico static_scripts_dir = %(here)s/static/scripts/ static_style_dir = %(here)s/static/june_2007_style/blue
The reports_webapp.log shows no errors but the process never completes loading. I stop the process manually after 20 minutes or more and no reports interface:
python path is:
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/pycrypto-2.5-py2.6-lin ux-x86_64-ucs4.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/python_lzo-1.08_2.03_s tatic-py2.6-linux-x86_64-ucs4.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/bx_python-0.7.1_7b95ff 194725-py2.6-linux-x86_64-ucs4.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/amqplib-0.6.1-py2.6.eg g,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/pexpect-2.4-py2.6.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r 6498-py2.6.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/Babel-0.9.4-py2.6.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/MarkupSafe-0.12-py2.6- linux-x86_64-ucs4.egg, /hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/WebHelpers-0.2-py2.6.e gg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/simplejson-2.1.1-py2.6 -linux-x86_64-ucs4.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/wchartype-0.1-py2.6.eg g,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/elementtree-1.2.6_2005 0316-py2.6.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/docutils-0.7-py2.6.egg ,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/WebOb-0.8.5-py2.6.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/Routes-1.12.3-py2.6.eg g,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/Cheetah-2.2.2-py2.6-li nux-x86_64-ucs4.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteDeploy-1.3.3-py2. 6.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteScript-1.7.3-py2. 6.egg, /hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/Paste-1.6-py2.6.egg, /hpcdata/galaxy-test/galaxy-setup/galaxy-dist/lib, /usr/lib/python26.zip, /usr/lib64/python2.6, /usr/lib64/python2.6/plat-linux2, /usr/lib64/python2.6/lib-tk, /usr/lib64/python2.6/lib-old, /usr/lib64/python2.6/lib-dynload, /usr/lib64/python2.6/site-packages, /usr/lib64/python2.6/site-packages/Numeric, /usr/lib64/python2.6/site-packages/gtk-2.0, /usr/local/lib64/python2.6/site-packages galaxy.model.custom_types DEBUG 2012-08-20 13:03:04,572 psycopg2 egg successfully loaded for postgres dialect galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,297 Enabling 'users' controller, class: Users galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,310 Enabling 'system' controller, class: System galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,354 Enabling 'sample_tracking' controller, class: SampleTracking galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,379 Enabling 'jobs' controller, class: Jobs galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,418 Enabling 'workflows' controller, class: Workflows galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,430 Enabling 'root' controller, class: Report galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,433 Enabling 'httpexceptions' middleware galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,443 Enabling 'recursive' middleware galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,590 Enabling 'error' middleware galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,601 Enabling 'trans logger' middleware galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,601 Enabling 'config' middleware galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,614 Enabling 'x-forwarded-host' middleware Starting server in PID 15823. serving on http://127.0.0.1:9001 Removing PID file reports_webapp.pid
I am not sure what is going on, but I need to get this working again. Any help would be greatly appreciated.
Thanks, Iry
The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible.
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible.