Hans,
I set the actual IP address and it works.
Thanks, Iry
On 8/24/12 8:07 AM, "Hans-Rudolf Hotz" hrh@fmi.ch wrote:
Hi Iry
- try different port
- try the actual IP address of your host
Regards, Hans
On 08/24/2012 01:52 PM, Iry Witham wrote:
Hi Team,
I am attempting to get the reports interface for my galaxy server to function. I have my reports.wsgi.ini configured so:
# ---- HTTP Server
[server:main]
use = egg:Paste#http port = 9001 host = 127.0.0.1 use_threadpool = true threadpool_workers = 10
# ---- Galaxy Webapps Report Interface
[app:main]
# Specifies the factory for the universe WSGI application paste.app_factory = galaxy.webapps.reports.buildapp:app_factory log_level = DEBUG
# Database connection # Galaxy reports are intended for production Galaxy instances, so sqlite is not supported. # You may use a SQLAlchemy connection string to specify an external database. database_connection = postgres:///galaxy_1
# Where dataset files are saved file_path = database/files # Temporary storage for additional datasets, this should be shared through the cluster new_file_path = database/tmp
# Session support (beaker) use_beaker_session = True session_type = memory session_data_dir = %(here)s/database/beaker_sessions session_key = galaxysessions session_secret = changethisinproduction
# Configuration for debugging middleware # debug = true use_lint = false
# NEVER enable this on a public site (even test or QA) # use_interactive = true
# path to sendmail # sendmail_path = /usr/sbin/sendmail
# Address to join mailing list # mailing_join_addr = galaxy-user-join@bx.psu.edu mailto:galaxy-user-join@bx.psu.edu
# Write thread status periodically to 'heartbeat.log' (careful, uses disk space rapidly!) ## use_heartbeat = True
# Profiling middleware (cProfile based) ## use_profile = True
# Mail smtp_server = smtp.jax.org error_email_to = cbr-help@jax.org mailto:cbr-help@jax.org
# Use the new iframe / javascript based layout use_new_layout = true
# Serving static files (needed if running standalone) static_enabled = True static_cache_time = 360 static_dir = %(here)s/static/ static_images_dir = %(here)s/static/images static_favicon_dir = %(here)s/static/favicon.ico static_scripts_dir = %(here)s/static/scripts/ static_style_dir = %(here)s/static/june_2007_style/blue
The reports_webapp.log shows no errors but the process never completes loading. I stop the process manually after 20 minutes or more and no reports interface:
python path is:
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/pycrypto-2.5-py2.6-lin ux-x86_64-ucs4.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/python_lzo-1.08_2.03_s tatic-py2.6-linux-x86_64-ucs4.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/bx_python-0.7.1_7b95ff 194725-py2.6-linux-x86_64-ucs4.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/amqplib-0.6.1-py2.6.eg g,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/pexpect-2.4-py2.6.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r 6498-py2.6.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/Babel-0.9.4-py2.6.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/MarkupSafe-0.12-py2.6- linux-x86_64-ucs4.egg, /hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/WebHelpers-0.2-py2.6.e gg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/simplejson-2.1.1-py2.6 -linux-x86_64-ucs4.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/wchartype-0.1-py2.6.eg g,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/elementtree-1.2.6_2005 0316-py2.6.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/docutils-0.7-py2.6.egg ,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/WebOb-0.8.5-py2.6.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/Routes-1.12.3-py2.6.eg g,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/Cheetah-2.2.2-py2.6-li nux-x86_64-ucs4.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteDeploy-1.3.3-py2. 6.egg,
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteScript-1.7.3-py2. 6.egg, /hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/Paste-1.6-py2.6.egg, /hpcdata/galaxy-test/galaxy-setup/galaxy-dist/lib, /usr/lib/python26.zip, /usr/lib64/python2.6, /usr/lib64/python2.6/plat-linux2, /usr/lib64/python2.6/lib-tk, /usr/lib64/python2.6/lib-old, /usr/lib64/python2.6/lib-dynload, /usr/lib64/python2.6/site-packages, /usr/lib64/python2.6/site-packages/Numeric, /usr/lib64/python2.6/site-packages/gtk-2.0, /usr/local/lib64/python2.6/site-packages galaxy.model.custom_types DEBUG 2012-08-20 13:03:04,572 psycopg2 egg successfully loaded for postgres dialect galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,297 Enabling 'users' controller, class: Users galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,310 Enabling 'system' controller, class: System galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,354 Enabling 'sample_tracking' controller, class: SampleTracking galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,379 Enabling 'jobs' controller, class: Jobs galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,418 Enabling 'workflows' controller, class: Workflows galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,430 Enabling 'root' controller, class: Report galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,433 Enabling 'httpexceptions' middleware galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,443 Enabling 'recursive' middleware galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,590 Enabling 'error' middleware galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,601 Enabling 'trans logger' middleware galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,601 Enabling 'config' middleware galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,614 Enabling 'x-forwarded-host' middleware Starting server in PID 15823. serving on http://127.0.0.1:9001 Removing PID file reports_webapp.pid
I am not sure what is going on, but I need to get this working again. Any help would be greatly appreciated.
Thanks, Iry
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