Dear Galaxy developers,
We hereby want to ask if anyone is interested in helping out to repair and update our Galaxy tool 'odose':
Webserverhttp://www.odose.nl/
Publicationhttp://journals.plos.org/plosone/article?id=10.1371/journal.pone.0062447
Public server pagehttps://wiki.galaxyproject.org/PublicGalaxyServers#ODoSE
Githubhttps://github.com/ODoSE/galaxy
Odose enables users to perform an array of population genetics tests on prokaryote genomes. Our tool is currently linked to NCBI to download various files, but continuous restructuring at NCBI has resulted in broken links which prevent the pipeline from working. Developer Tim te Beek has moved on outside academia and does not have the time to fix it, but is available to give answer question/give instructions. We believe our tool is highly useful for microbiologists and would greatly appreciate any help from the Galaxy community to get it working properly again! Please get in touch if you would like to know more.
Best Wishes, Michiel Vos, Mark van Passel and Tim te Beek
Michiel Vos European Centre for Environment and Human Health University of Exeter ESI Building, Penryn Campus TR10 9FE Penryn, UK 0044 (0)1326259464 https://coastalpathogens.wordpress.com/