Hi,
I am trying to configure the proper memory resource requests for my Galaxy tool. This is what I have under the tool_runners section of universe_wsgi.ini
[galaxy:tool_runners] ... mytoolname = drmaa://-l mem_free=1G -l mem_token=1G -l h_vmem=1G/ ...
When I execute my tool on Galaxy, I get the error below in the shell that I ran "sh run.sh":
galaxy.jobs.runners.drmaa ERROR 2011-07-26 09:54:01,930 Uncaught exception queueing job Traceback (most recent call last): File "/home/kmnip/galaxy/galaxy-central/lib/galaxy/jobs/runners/drmaa.py", line 112, in run_next self.queue_job( obj ) File "/home/kmnip/galaxy/galaxy-central/lib/galaxy/jobs/runners/drmaa.py", line 177, in queue_job job_id = self.ds.runJob(jt) File "/home/kmnip/galaxy/galaxy-central/eggs/drmaa-0.4b3-py2.4.egg/drmaa/__init__.py", line 331, in runJob File "/home/kmnip/galaxy/galaxy-central/eggs/drmaa-0.4b3-py2.4.egg/drmaa/helpers.py", line 213, in c File "/home/kmnip/galaxy/galaxy-central/eggs/drmaa-0.4b3-py2.4.egg/drmaa/errors.py", line 90, in error_check DeniedByDrmException: code 17: error: no suitable queues
All the flags I used work with qsub commands on the SGE cluster I use. The tool runs when I comment out the line in universe_wsgi.ini.
Thanks, Ka Ming