details:
http://www.bx.psu.edu/hg/galaxy/rev/3b6771227a43
changeset: 1532:3b6771227a43
user: Dan Blankenberg <dan(a)bx.psu.edu>
date: Fri Sep 26 09:10:04 2008 -0400
description:
Fix for interval to bed converter.
1 file(s) affected in this change:
lib/galaxy/datatypes/converters/interval_to_bed_converter.py
diffs (11 lines):
diff -r aa1088e4c6c6 -r 3b6771227a43
lib/galaxy/datatypes/converters/interval_to_bed_converter.py
--- a/lib/galaxy/datatypes/converters/interval_to_bed_converter.py Thu Sep 25 15:03:05
2008 -0400
+++ b/lib/galaxy/datatypes/converters/interval_to_bed_converter.py Fri Sep 26 09:10:04
2008 -0400
@@ -38,6 +38,7 @@
skipped_lines = 0
first_skipped_line = 0
out = open( output_name,'w' )
+ count = 0
for count, region in enumerate( bx.intervals.io.NiceReaderWrapper( open( input_name,
'r' ), chrom_col=chromCol, start_col=startCol, end_col=endCol,
strand_col=strandCol, fix_strand=True, return_header=False, return_comments=False ) ):
try:
if nameCol >= 0: