Hello, Are you able to run `qstat -x` on the command line on the remote system? What's the output? --nate On Thu, Mar 6, 2014 at 1:01 PM, ngsflow@hygenomics.com <ngsflow@hygenomics.com> wrote:
hi all:
galaxy.jobs.runners.cli_job.torque WARNING 2014-03-07 11:23:33,764 No valid qstat XML return from `qstat -x`, got the following:
galaxy.jobs.runners ERROR 2014-03-07 11:23:33,765 Unhandled exception checking active jobs
Traceback (most recent call last):
File "/share/home/ldapuser/main/lib/galaxy/jobs/runners/__init__.py", line 339, in monitor
self.check_watched_items()
File "/share/home/ldapuser/main/lib/galaxy/jobs/runners/cli.py", line 150, in check_watched_items
job_states = self.__get_job_states()
File "/share/home/ldapuser/main/lib/galaxy/jobs/runners/cli.py", line 202, in __get_job_states
job_states.update(job_interface.parse_status(cmd_out.stdout, job_ids))
TypeError: 'NoneType' object is not iterable
#qmgr -c "p q batch"
create queue batch set queue batch queue_type = Execution set queue batch enabled = True set queue batch started = True
Finish the torque tasks ， throw exceptions in the log file。 ________________________________ ngsflow@hygenomics.com
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/