Hello,
Are you able to run `qstat -x` on the command line on the remote system? What's the output?
--nate
On Thu, Mar 6, 2014 at 1:01 PM, ngsflow@hygenomics.com ngsflow@hygenomics.com wrote:
hi all:
galaxy.jobs.runners.cli_job.torque WARNING 2014-03-07 11:23:33,764 No valid qstat XML return from `qstat -x`, got the following:
galaxy.jobs.runners ERROR 2014-03-07 11:23:33,765 Unhandled exception checking active jobs
Traceback (most recent call last):
File "/share/home/ldapuser/main/lib/galaxy/jobs/runners/__init__.py", line 339, in monitor
self.check_watched_items()File "/share/home/ldapuser/main/lib/galaxy/jobs/runners/cli.py", line 150, in check_watched_items
job_states = self.__get_job_states()File "/share/home/ldapuser/main/lib/galaxy/jobs/runners/cli.py", line 202, in __get_job_states
job_states.update(job_interface.parse_status(cmd_out.stdout, job_ids))TypeError: 'NoneType' object is not iterable
#qmgr -c "p q batch"
create queue batch set queue batch queue_type = Execution set queue batch enabled = True set queue batch started = True
Finish the torque tasks ， throw exceptions in the log file。 ________________________________ ngsflow@hygenomics.com
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