details: http://www.bx.psu.edu/hg/galaxy/rev/26c40d8e8fdc changeset: 3509:26c40d8e8fdc user: gua110 date: Wed Mar 10 16:23:53 2010 -0500 description: Updated functional tests for \"multivariate statistics\" tools, by shortening the number of decimal places displayed, so that they pass on all test platforms. diffstat: test-data/cca_out1.tabular | 30 +- test-data/cca_out2.pdf | 4 +- test-data/kcca_out1.tabular | 602 +++++++++++++++++++------------------- test-data/kcca_out2.tabular | 602 +++++++++++++++++++------------------- test-data/kpca_out1.tabular | 602 +++++++++++++++++++------------------- test-data/kpca_out2.pdf | 4 +- test-data/kpca_out3.tabular | 602 +++++++++++++++++++------------------- test-data/kpca_out4.pdf | 4 +- test-data/pca_out1.tabular | 312 ++++++++++---------- test-data/pca_out2.pdf | 4 +- test-data/pca_out3.tabular | 312 ++++++++++---------- test-data/pca_out4.pdf | 4 +- tools/multivariate_stats/cca.py | 18 +- tools/multivariate_stats/kcca.py | 6 +- tools/multivariate_stats/kpca.py | 6 +- tools/multivariate_stats/pca.py | 19 +- 16 files changed, 1568 insertions(+), 1563 deletions(-) diffs (truncated from 3327 to 3000 lines): diff -r 07a608852925 -r 26c40d8e8fdc test-data/cca_out1.tabular --- a/test-data/cca_out1.tabular Wed Mar 10 16:11:59 2010 -0500 +++ b/test-data/cca_out1.tabular Wed Mar 10 16:23:53 2010 -0500 @@ -1,22 +1,22 @@ #Component 1 2 -#Correlation 0.940897180432 0.131074795925 -#F-statistic 144.410560578 2.5696974623 -#p-value 6.21285598619e-68 0.111075110551 +#Correlation 0.9409 0.1311 +#F-statistic 144.4 2.57 +#p-value 6.213e-68 0.1111 #X-Coefficients 1 2 -c3 1.50661351834 -3.37790409332 -c4 -0.537226204038 3.65944099051 +c3 1.507 -3.378 +c4 -0.5372 3.659 #Y-Coefficients 1 2 -c1 6.35046749378 3.37940792566 -c2 -2.6597206473 6.66976562808 +c1 6.35 3.379 +c2 -2.66 6.67 #X-Loadings 1 2 -c3 0.989395177676 0.145248691528 -c4 0.913276653253 0.407339851504 +c3 0.9894 0.1452 +c4 0.9133 0.4073 #Y-Loadings 1 2 -c1 0.928869265104 0.370407732566 -c2 -0.469775462051 0.882785939656 +c1 0.9289 0.3704 +c2 -0.4698 0.8828 #X-CrossLoadings 1 2 -c3 0.930919133009 0.0190384426004 -c4 0.859299428 0.0533919879079 +c3 0.9309 0.01904 +c4 0.8593 0.05339 #Y-CrossLoadings 1 2 -c1 0.873970472527 0.0485511179549 -c2 -0.44201040768 0.115710986885 +c1 0.874 0.04855 +c2 -0.442 0.1157 diff -r 07a608852925 -r 26c40d8e8fdc test-data/cca_out2.pdf --- a/test-data/cca_out2.pdf Wed Mar 10 16:11:59 2010 -0500 +++ b/test-data/cca_out2.pdf Wed Mar 10 16:23:53 2010 -0500 @@ -2,8 +2,8 @@ %âãÏÓ\r 1 0 obj << -/CreationDate (D:20100303132536) -/ModDate (D:20100303132536) +/CreationDate (D:20100310155029) +/ModDate (D:20100310155029) /Title (R Graphics Output) /Producer (R 2.10.0) /Creator (R) diff -r 07a608852925 -r 26c40d8e8fdc test-data/kcca_out1.tabular --- a/test-data/kcca_out1.tabular Wed Mar 10 16:11:59 2010 -0500 +++ b/test-data/kcca_out1.tabular Wed Mar 10 16:23:53 2010 -0500 @@ -1,304 +1,304 @@ #Component 1 2 3 4 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b/test-data/kpca_out2.pdf Wed Mar 10 16:23:53 2010 -0500 @@ -2,8 +2,8 @@ %âãÏÓ\r 1 0 obj << -/CreationDate (D:20100303115833) -/ModDate (D:20100303115833) +/CreationDate (D:20100310152519) +/ModDate (D:20100310152519) /Title (R Graphics Output) /Producer (R 2.10.0) /Creator (R) diff -r 07a608852925 -r 26c40d8e8fdc test-data/kpca_out3.tabular --- a/test-data/kpca_out3.tabular Wed Mar 10 16:11:59 2010 -0500 +++ b/test-data/kpca_out3.tabular Wed Mar 10 16:23:53 2010 -0500 @@ -1,304 +1,304 @@ #Component 1 -#Eigenvalue 0.383633782425 +#Eigenvalue 0.3836 #Principal component vectors 1 -1 -0.185843051028 -2 -0.181428165807 -3 -0.185859249771 -4 -0.180608592797 -5 -0.185779114773 -6 -0.173450096143 -7 -0.184654978426 -8 -0.183342755691 -9 -0.179634326545 -10 -0.181320357007 -11 -0.183283707685 -12 -0.180538178566 -13 -0.182036533193 -14 -0.185344590367 -15 -0.184526727477 -16 -0.170434338287 -17 -0.183277063273 -18 -0.184927028233 -19 -0.175718857154 -20 -0.181680491185 -21 -0.177181023283 -22 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-/CreationDate (D:20100303121837) -/ModDate (D:20100303121837) +/CreationDate (D:20100310154313) +/ModDate (D:20100310154313) /Title (R Graphics Output) /Producer (R 2.10.0) /Creator (R) diff -r 07a608852925 -r 26c40d8e8fdc test-data/pca_out1.tabular --- a/test-data/pca_out1.tabular Wed Mar 10 16:11:59 2010 -0500 +++ b/test-data/pca_out1.tabular Wed Mar 10 16:23:53 2010 -0500 @@ -1,159 +1,159 @@ #Component 1 2 3 4 -#Std. deviation 0.959802547771 0.143553847861 0.383866224491 1.70611197867 -#Proportion of variance explained 0.230305232677 0.00515192680891 0.0368383195763 0.727704520938 +#Std. deviation 0.9598 0.1436 0.3839 1.706 +#Proportion of variance explained 0.2303 0.005152 0.03684 0.7277 #Loadings 1 2 3 4 -c1 0.522371620408 -0.37231836335 0.721016809062 0.2619955869 -c2 -0.263354915314 -0.925556494147 -0.242032877214 -0.124134810063 -c3 0.581254005598 -0.0210947768412 -0.140892258488 -0.80115426908 -c4 0.565611049883 -0.0654157690789 -0.633801403356 0.523546271604 +c1 0.5224 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0.2213 +148 1.521 -0.2668 -0.1793 0.1189 +149 1.376 -1.016 -0.9314 0.02415 +150 0.9593 0.02228 -0.5288 -0.1637 diff -r 07a608852925 -r 26c40d8e8fdc test-data/pca_out2.pdf --- a/test-data/pca_out2.pdf Wed Mar 10 16:11:59 2010 -0500 +++ b/test-data/pca_out2.pdf Wed Mar 10 16:23:53 2010 -0500 @@ -2,8 +2,8 @@ %âãÏÓ\r 1 0 obj << -/CreationDate (D:20100303130628) -/ModDate (D:20100303130628) +/CreationDate (D:20100310155829) +/ModDate (D:20100310155829) /Title (R Graphics Output) /Producer (R 2.10.0) /Creator (R) diff -r 07a608852925 -r 26c40d8e8fdc test-data/pca_out3.tabular --- a/test-data/pca_out3.tabular Wed Mar 10 16:11:59 2010 -0500 +++ b/test-data/pca_out3.tabular Wed Mar 10 16:23:53 2010 -0500 @@ -1,159 +1,159 @@ #Component 1 2 3 4 -#Std. deviation 0.490539105967 0.153379073796 0.279285544512 2.04857881547 -#Proportion of variance explained 0.0530155678505 0.00518308545019 0.017185139525 0.924616207174 +#Std. deviation 0.4905 0.1534 0.2793 2.049 +#Proportion of variance explained 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