[galaxy-dev] [hg] galaxy 3509: Updated functional tests for \"multivariate st...

details: http://www.bx.psu.edu/hg/galaxy/rev/26c40d8e8fdc changeset: 3509:26c40d8e8fdc user: gua110 date: Wed Mar 10 16:23:53 2010 -0500 description: Updated functional tests for "multivariate statistics" tools, by shortening the number of decimal places displayed, so that they pass on all test platforms.

diffstat:

test-data/cca_out1.tabular | 30 +- test-data/cca_out2.pdf | 4 +- test-data/kcca_out1.tabular | 602 +++++++++++++++++++------------------- test-data/kcca_out2.tabular | 602 +++++++++++++++++++------------------- test-data/kpca_out1.tabular | 602 +++++++++++++++++++------------------- test-data/kpca_out2.pdf | 4 +- test-data/kpca_out3.tabular | 602 +++++++++++++++++++------------------- test-data/kpca_out4.pdf | 4 +- test-data/pca_out1.tabular | 312 ++++++++++---------- test-data/pca_out2.pdf | 4 +- test-data/pca_out3.tabular | 312 ++++++++++---------- test-data/pca_out4.pdf | 4 +- tools/multivariate_stats/cca.py | 18 +- tools/multivariate_stats/kcca.py | 6 +- tools/multivariate_stats/kpca.py | 6 +- tools/multivariate_stats/pca.py | 19 +- 16 files changed, 1568 insertions(+), 1563 deletions(-)

diffs (truncated from 3327 to 3000 lines):

diff -r 07a608852925 -r 26c40d8e8fdc test-data/cca_out1.tabular --- a/test-data/cca_out1.tabular Wed Mar 10 16:11:59 2010 -0500 +++ b/test-data/cca_out1.tabular Wed Mar 10 16:23:53 2010 -0500 @@ -1,22 +1,22 @@ #Component 1 2 -#Correlation 0.940897180432 0.131074795925 -#F-statistic 144.410560578 2.5696974623 -#p-value 6.21285598619e-68 0.111075110551 +#Correlation 0.9409 0.1311 +#F-statistic 144.4 2.57 +#p-value 6.213e-68 0.1111 #X-Coefficients 1 2 -c3 1.50661351834 -3.37790409332 -c4 -0.537226204038 3.65944099051 +c3 1.507 -3.378 +c4 -0.5372 3.659 #Y-Coefficients 1 2 -c1 6.35046749378 3.37940792566 -c2 -2.6597206473 6.66976562808 +c1 6.35 3.379 +c2 -2.66 6.67 #X-Loadings 1 2 -c3 0.989395177676 0.145248691528 -c4 0.913276653253 0.407339851504 +c3 0.9894 0.1452 +c4 0.9133 0.4073 #Y-Loadings 1 2 -c1 0.928869265104 0.370407732566 -c2 -0.469775462051 0.882785939656 +c1 0.9289 0.3704 +c2 -0.4698 0.8828 #X-CrossLoadings 1 2 -c3 0.930919133009 0.0190384426004 -c4 0.859299428 0.0533919879079 +c3 0.9309 0.01904 +c4 0.8593 0.05339 #Y-CrossLoadings 1 2 -c1 0.873970472527 0.0485511179549 -c2 -0.44201040768 0.115710986885 +c1 0.874 0.04855 +c2 -0.442 0.1157 diff -r 07a608852925 -r 26c40d8e8fdc test-data/cca_out2.pdf --- a/test-data/cca_out2.pdf Wed Mar 10 16:11:59 2010 -0500 +++ b/test-data/cca_out2.pdf Wed Mar 10 16:23:53 2010 -0500 @@ -2,8 +2,8 @@ %âãÏÓ\r 1 0 obj << -/CreationDate (D:20100303132536) -/ModDate (D:20100303132536) +/CreationDate (D:20100310155029) +/ModDate (D:20100310155029) /Title (R Graphics Output) /Producer (R 2.10.0) /Creator (R) diff -r 07a608852925 -r 26c40d8e8fdc test-data/kcca_out1.tabular --- a/test-data/kcca_out1.tabular Wed Mar 10 16:11:59 2010 -0500 +++ b/test-data/kcca_out1.tabular Wed Mar 10 16:23:53 2010 -0500 @@ -1,304 +1,304 @@ #Component 1 2 3 4 -#Correlation -0.999499965799 0.999499965799 -0.937388978867 0.937388978867 +#Correlation -0.9995 0.9995 -0.9374 0.9374 #Estimated X-coefficients 1 2 3 4 -1 -0.00159226306681 -0.00159226306681 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test-data/pca_out1.tabular --- a/test-data/pca_out1.tabular Wed Mar 10 16:11:59 2010 -0500 +++ b/test-data/pca_out1.tabular Wed Mar 10 16:23:53 2010 -0500 @@ -1,159 +1,159 @@ #Component 1 2 3 4 -#Std. deviation 0.959802547771 0.143553847861 0.383866224491 1.70611197867 -#Proportion of variance explained 0.230305232677 0.00515192680891 0.0368383195763 0.727704520938 +#Std. deviation 0.9598 0.1436 0.3839 1.706 +#Proportion of variance explained 0.2303 0.005152 0.03684 0.7277 #Loadings 1 2 3 4 -c1 0.522371620408 -0.37231836335 0.721016809062 0.2619955869 -c2 -0.263354915314 -0.925556494147 -0.242032877214 -0.124134810063 -c3 0.581254005598 -0.0210947768412 -0.140892258488 -0.80115426908 -c4 0.565611049883 -0.0654157690789 -0.633801403356 0.523546271604 +c1 0.5224 -0.3723 0.721 0.262 +c2 -0.2634 -0.9256 -0.242 -0.1241 +c3 0.5813 -0.02109 -0.1409 -0.8012 +c4 0.5656 -0.06542 -0.6338 0.5235 #Scores 1 2 3 4 -1 -2.26454172839 -0.505703902774 0.121943347782 0.0230733234546 -2 -2.08642550062 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2010 -0500 +++ b/test-data/pca_out2.pdf Wed Mar 10 16:23:53 2010 -0500 @@ -2,8 +2,8 @@ %âãÏÓ\r 1 0 obj << -/CreationDate (D:20100303130628) -/ModDate (D:20100303130628) +/CreationDate (D:20100310155829) +/ModDate (D:20100310155829) /Title (R Graphics Output) /Producer (R 2.10.0) /Creator (R) diff -r 07a608852925 -r 26c40d8e8fdc test-data/pca_out3.tabular --- a/test-data/pca_out3.tabular Wed Mar 10 16:11:59 2010 -0500 +++ b/test-data/pca_out3.tabular Wed Mar 10 16:23:53 2010 -0500 @@ -1,159 +1,159 @@ #Component 1 2 3 4 -#Std. deviation 0.490539105967 0.153379073796 0.279285544512 2.04857881547 -#Proportion of variance explained 0.0530155678505 0.00518308545019 0.017185139525 0.924616207174 +#Std. deviation 0.4905 0.1534 0.2793 2.049 +#Proportion of variance explained 0.05302 0.005183 0.01719 0.9246 #Loadings 1 2 3 4 -c1 0.361589677381 -0.656539883286 0.580997279828 0.317254547169 -c2 -0.0822688898922 -0.729712371326 -0.596418087938 -0.324094352418 -c3 0.856572105291 0.175767403429 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