Hello,
We are incurring a problem with cleanup.py:
We have already run two cycles of cleanup.py (1-6) with a cut off of 30 days, we see in the logs that many datasets are deleted, but when we do df -kh to check the file system, we see creeping up utilization of space - no relinquishing of any space.
We are running in a docker environment and our cleanup job looks as follows: ================================================================
#!/bin/bash
export GALAXY_VIRTUAL_ENV=/galaxy_venv
source $GALAXY_VIRTUAL_ENV/bin/activate
export script="/galaxy-central/scripts/cleanup_datasets/cleanup_datasets.py"
export config="/etc/galaxy/galaxy.ini"
export logdir="/export/galaxy-central/logs"
export days=30
export num=$1
nohup $script $config -d $days -$num -r -f >> $logdir/cleanup$num.log &
================================================================
and we run it with ./run_cleanup.sh 1
or 2, 3 etc.
Any ideas ?
Thanks!
George Weingart PhD
Huttenhower Lab
Harvard School of Public Health