Dear list,
In order to test the job resubmission feature I wrote a little tool for galaxy that just wastes a specified (minimum) time and memory (using different programming languages) for testing the new DRMAA job runner that I wrote.
When linting it with planemo seemingly all tests are successful, but in the end I still get a fail -- verbose mode is also of no help here.
Applying linter tests... CHECK .. CHECK: 7 test(s) found. Applying linter output... CHECK .. INFO: 1 outputs found. Applying linter inputs... CHECK .. INFO: Found 3 input parameters. Applying linter help... CHECK .. CHECK: Tool contains help section. .. CHECK: Help contains valid reStructuredText. Applying linter general... CHECK .. CHECK: Tool defines a version [0.1.0]. .. CHECK: Tool defines a name [Waste time and memory]. .. CHECK: Tool defines an id [sleepwaste]. .. CHECK: Tool targets 16.01 Galaxy profile. Applying linter command... CHECK .. INFO: Tool contains a command. Applying linter citations... WARNING .. WARNING: No citations found, consider adding citations to your tool. Applying linter tool_xsd... CHECK .. INFO: File validates against XML schema. Failed linting
The test of the tool are all successful. Any ideas what is wrong?
Once the problems are solved, would such a tool also be useful in the toolshed?
Cheers, Matthias