Michael Siebauer wrote:
> Is there also a way to supress these:
>
> 192.168.3.61 - - [07/Sep/2010:13:05:48 +0200] "POST
> /root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history"
> "Mozilla/5.0 (X11; U; Linux x86_64; en-US; rv:1.9.2.8) Gecko/20100723
> Ubuntu/10.04 (lucid) Firefox/3.6.8"
>
> Logging Messages?
Just the hits to history_item_updates, or all Apache-style web logging?
--nate
>
> Thx Michael
>
> Am 06/02/2010 03:15 AM, schrieb Michael Pheasant:
>> Thanks, that fixed it, they were uncommented!
>> CHeers
>> m
>>
>> --
>> Michael Pheasant
>> Software Engineer
>> Queensland Facility for Advanced Bioinformatics
>> Level 6, QBP
>> University of Queensland, QLD 4072
>> T: +61 (0)7 3346 2070
>> F: +61 (0)7 3346 2101
>>
www.qfab.org
>>
>>
>>
>> On Wed, Jun 2, 2010 at 9:56 AM, James Taylor<james(a)bx.psu.edu> wrote:
>>> Have you uncommented either of:
>>>
>>> #database_engine_option_echo = true
>>> #database_engine_option_echo_pool = true
>>>
>>> In you universe_wsgi.ini?
>>>
>>> On Jun 1, 2010, at 7:53 PM, Michael Pheasant wrote:
>>>
>>>> using run script with single web server/jobrunner:
>>>> universe_wsgi.ini:
>>>> log_level = WARNING
>>>> enable_job_running = True
>>>>
>>>> *) During the startup sequence there is a bunch of INFO stuff;
>>>>
>>>> 2010-06-02 09:49:55,321 INFO sqlalchemy.pool.QueuePool.0x...8410
>>>> Created new connection<_mysql.connection open to 'localhost'
at
>>>> 1aab1730>
>>>> sqlalchemy.pool.QueuePool.0x...8410 INFO 2010-06-02 09:49:55,321
>>>> Created new connection<_mysql.connection open to 'localhost'
at
>>>> 1aab1730>
>>>> 2010-06-02 09:49:55,321 INFO sqlalchemy.pool.QueuePool.0x...8410
>>>> Connection<_mysql.connection open to 'localhost' at
1aab1730>
>>>> checked
>>>> out from pool
>>>> sqlalchemy.pool.QueuePool.0x...8410 INFO 2010-06-02 09:49:55,321
>>>> Connection<_mysql.connection open to 'localhost' at
1aab1730>
>>>> checked
>>>> out from pool
>>>> 2010-06-02 09:49:55,322 INFO sqlalchemy.engine.base.Engine.0x...85d0
>>>> SHOW VARIABLES LIKE 'character_set%%'
>>>> sqlalchemy.engine.base.Engine.0x...85d0 INFO 2010-06-02 09:49:55,322
>>>> SHOW VARIABLES LIKE 'character_set%%'
>>>> 2010-06-02 09:49:55,322 INFO
>>>> sqlalchemy.engine.base.Engine.0x...85d0 ()
>>>> sqlalchemy.engine.base.Engine.0x...85d0 INFO 2010-06-02
>>>> 09:49:55,322 ()
>>>> 2010-06-02 09:49:55,323 INFO sqlalchemy.engine.base.Engine.0x...85d0
>>>> SHOW VARIABLES LIKE 'sql_mode'
>>>> sqlalchemy.engine.base.Engine.0x...85d0 INFO 2010-06-02 09:49:55,323
>>>> SHOW VARIABLES LIKE 'sql_mode'
>>>> 2010-06-02 09:49:55,323 INFO
>>>> sqlalchemy.engine.base.Engine.0x...85d0 ()
>>>> sqlalchemy.engine.base.Engine.0x...85d0 INFO 2010-06-02
>>>> 09:49:55,323 ()
>>>> 2010-06-02 09:49:55,348 INFO sqlalchemy.engine.base.Engine.0x...85d0
>>>> SHOW CREATE TABLE dataset
>>>> sqlalchemy.engine.base.Engine.0x...85d0 INFO 2010-06-02 09:49:55,348
>>>> SHOW CREATE TABLE dataset
>>>> 2010-06-02 09:49:55,348 INFO
>>>> sqlalchemy.engine.base.Engine.0x...85d0 ()
>>>>
>>>>
>>>> Then every second there is the database ping for jobs;
>>>>
>>>> sqlalchemy.engine.base.Engine.0x...0e50 INFO 2010-06-02 09:50:15,153
>>>> SELECT job.id AS job_id, job.create_time AS job_create_time,
>>>> job.update_time AS job_update_time, job.history_id AS job_history_id,
>>>> job.library_folder_id AS job_library_folder_id, job.tool_id AS
>>>> job_tool_id, job.tool_version AS job_tool_version, job.state AS
>>>> job_state, job.info AS job_info, job.command_line AS
>>>> job_command_line,
>>>> job.param_filename AS job_param_filename, job.runner_name AS
>>>> job_runner_name_1, job.stdout AS job_stdout, job.stderr AS
>>>> job_stderr,
>>>> job.traceback AS job_traceback, job.session_id AS job_session_id,
>>>> job.job_runner_name AS job_job_runner_name,
>>>> job.job_runner_external_id
>>>> AS job_job_runner_external_id,
>>>> library_dataset_dataset_association_1.id AS
>>>> library_dataset_dataset_association_1_id,
>>>> library_dataset_dataset_association_1.library_dataset_id AS
>>>> library_dataset_dataset_association_1_library_dataset_id,
>>>> library_dataset_dataset_association_1.dataset_id AS
>>>> library_dataset_dataset_association_1_dataset_id,
>>>> library_dataset_dataset_association_1.create_time AS
>>>> library_dataset_dataset_association_1_create_time,
>>>> library_dataset_dataset_association_1.update_time AS
>>>> library_dataset_dataset_association_1_update_time,
>>>>
>>>>
library_dataset_dataset_association_1.copied_from_history_dataset_association_id
>>>>
>>>> AS
>>>>
library_dataset_dataset_association_1_copied_from_history_dataset_association_id,
>>>>
>>>>
>>>>
library_dataset_dataset_association_1.copied_from_library_dataset_dataset_association_id
>>>>
>>>> AS
>>>>
library_dataset_dataset_association_1_copied_from_library_dataset_dataset_association_id,
>>>>
>>>> library_dataset_dataset_association_1.name AS
>>>> library_dataset_dataset_association_1_name,
>>>> library_dataset_dataset_association_1.info AS
>>>> library_dataset_dataset_association_1_info,
>>>> library_dataset_dataset_association_1.blurb AS
>>>> library_dataset_dataset_association_1_blurb,
>>>> library_dataset_dataset_association_1.peek AS
>>>> library_dataset_dataset_association_1_peek,
>>>> library_dataset_dataset_association_1.extension AS
>>>> library_dataset_dataset_association_1_extension,
>>>> library_dataset_dataset_association_1.metadata AS
>>>> library_dataset_dataset_association_1_metadata,
>>>> library_dataset_dataset_association_1.parent_id AS
>>>> library_dataset_dataset_association_1_parent_id,
>>>> library_dataset_dataset_association_1.designation AS
>>>> library_dataset_dataset_association_1_designation,
>>>> library_dataset_dataset_association_1.deleted AS
>>>> library_dataset_dataset_association_1_deleted,
>>>> library_dataset_dataset_association_1.visible AS
>>>> library_dataset_dataset_association_1_visible,
>>>> library_dataset_dataset_association_1.user_id AS
>>>> library_dataset_dataset_association_1_user_id,
>>>> library_dataset_dataset_association_1.message AS
>>>> library_dataset_dataset_association_1_message,
>>>> job_to_output_library_dataset_1.id AS
>>>> job_to_output_library_dataset_1_id,
>>>> job_to_output_library_dataset_1.job_id AS
>>>> job_to_output_library_dataset_1_job_id,
>>>> job_to_output_library_dataset_1.ldda_id AS
>>>> job_to_output_library_dataset_1_ldda_id,
>>>> job_to_output_library_dataset_1.name AS
>>>> job_to_output_library_dataset_1_name, dataset_1.id AS dataset_1_id,
>>>> dataset_1.create_time AS dataset_1_create_time, dataset_1.update_time
>>>> AS dataset_1_update_time, dataset_1.state AS dataset_1_state,
>>>> dataset_1.deleted AS dataset_1_deleted, dataset_1.purged AS
>>>> dataset_1_purged, dataset_1.purgable AS dataset_1_purgable,
>>>> dataset_1.external_filename AS dataset_1_external_filename,
>>>> dataset_1._extra_files_path AS dataset_1__extra_files_path,
>>>> dataset_1.file_size AS dataset_1_file_size,
>>>> history_dataset_association_1.id AS history_dataset_association_1_id,
>>>> history_dataset_association_1.history_id AS
>>>> history_dataset_association_1_history_id,
>>>> history_dataset_association_1.dataset_id AS
>>>> history_dataset_association_1_dataset_id,
>>>> history_dataset_association_1.create_time AS
>>>> history_dataset_association_1_create_time,
>>>> history_dataset_association_1.update_time AS
>>>> history_dataset_association_1_update_time,
>>>> history_dataset_association_1.copied_from_history_dataset_association_id
>>>>
>>>> AS
>>>>
history_dataset_association_1_copied_from_history_dataset_association_id,
>>>>
>>>>
>>>>
history_dataset_association_1.copied_from_library_dataset_dataset_association_id
>>>>
>>>> AS
>>>>
history_dataset_association_1_copied_from_library_dataset_dataset_association_id,
>>>>
>>>> history_dataset_association_1.hid AS
>>>> history_dataset_association_1_hid, history_dataset_association_1.name
>>>> AS history_dataset_association_1_name,
>>>> history_dataset_association_1.info AS
>>>> history_dataset_association_1_info,
>>>> history_dataset_association_1.blurb AS
>>>> history_dataset_association_1_blurb,
>>>> history_dataset_association_1.peek AS
>>>> history_dataset_association_1_peek,
>>>> history_dataset_association_1.extension AS
>>>> history_dataset_association_1_extension,
>>>> history_dataset_association_1.metadata AS
>>>> history_dataset_association_1_metadata,
>>>> history_dataset_association_1.parent_id AS
>>>> history_dataset_association_1_parent_id,
>>>> history_dataset_association_1.designation AS
>>>> history_dataset_association_1_designation,
>>>> history_dataset_association_1.deleted AS
>>>> history_dataset_association_1_deleted,
>>>> history_dataset_association_1.visible AS
>>>> history_dataset_association_1_visible, job_to_input_dataset_1.id AS
>>>> job_to_input_dataset_1_id, job_to_input_dataset_1.job_id AS
>>>> job_to_input_dataset_1_job_id, job_to_input_dataset_1.dataset_id AS
>>>> job_to_input_dataset_1_dataset_id, job_to_input_dataset_1.name AS
>>>> job_to_input_dataset_1_name, dataset_2.id AS dataset_2_id,
>>>> dataset_2.create_time AS dataset_2_create_time, dataset_2.update_time
>>>> AS dataset_2_update_time, dataset_2.state AS dataset_2_state,
>>>> dataset_2.deleted AS dataset_2_deleted, dataset_2.purged AS
>>>> dataset_2_purged, dataset_2.purgable AS dataset_2_purgable,
>>>> dataset_2.external_filename AS dataset_2_external_filename,
>>>> dataset_2._extra_files_path AS dataset_2__extra_files_path,
>>>> dataset_2.file_size AS dataset_2_file_size,
>>>> history_dataset_association_2.id AS history_dataset_association_2_id,
>>>> history_dataset_association_2.history_id AS
>>>> history_dataset_association_2_history_id,
>>>> history_dataset_association_2.dataset_id AS
>>>> history_dataset_association_2_dataset_id,
>>>> history_dataset_association_2.create_time AS
>>>> history_dataset_association_2_create_time,
>>>> history_dataset_association_2.update_time AS
>>>> history_dataset_association_2_update_time,
>>>> history_dataset_association_2.copied_from_history_dataset_association_id
>>>>
>>>> AS
>>>>
history_dataset_association_2_copied_from_history_dataset_association_id,
>>>>
>>>>
>>>>
history_dataset_association_2.copied_from_library_dataset_dataset_association_id
>>>>
>>>> AS
>>>>
history_dataset_association_2_copied_from_library_dataset_dataset_association_id,
>>>>
>>>> history_dataset_association_2.hid AS
>>>> history_dataset_association_2_hid, history_dataset_association_2.name
>>>> AS history_dataset_association_2_name,
>>>> history_dataset_association_2.info AS
>>>> history_dataset_association_2_info,
>>>> history_dataset_association_2.blurb AS
>>>> history_dataset_association_2_blurb,
>>>> history_dataset_association_2.peek AS
>>>> history_dataset_association_2_peek,
>>>> history_dataset_association_2.extension AS
>>>> history_dataset_association_2_extension,
>>>> history_dataset_association_2.metadata AS
>>>> history_dataset_association_2_metadata,
>>>> history_dataset_association_2.parent_id AS
>>>> history_dataset_association_2_parent_id,
>>>> history_dataset_association_2.designation AS
>>>> history_dataset_association_2_designation,
>>>> history_dataset_association_2.deleted AS
>>>> history_dataset_association_2_deleted,
>>>> history_dataset_association_2.visible AS
>>>> history_dataset_association_2_visible, job_to_output_dataset_1.id AS
>>>> job_to_output_dataset_1_id, job_to_output_dataset_1.job_id AS
>>>> job_to_output_dataset_1_job_id, job_to_output_dataset_1.dataset_id AS
>>>> job_to_output_dataset_1_dataset_id, job_to_output_dataset_1.name AS
>>>> job_to_output_dataset_1_name
>>>> FROM job LEFT OUTER JOIN job_to_output_library_dataset AS
>>>> job_to_output_library_dataset_1 ON job.id =
>>>> job_to_output_library_dataset_1.job_id LEFT OUTER JOIN
>>>> library_dataset_dataset_association AS
>>>> library_dataset_dataset_association_1 ON
>>>> library_dataset_dataset_association_1.id =
>>>> job_to_output_library_dataset_1.ldda_id LEFT OUTER JOIN
>>>> job_to_input_dataset AS job_to_input_dataset_1 ON job.id =
>>>> job_to_input_dataset_1.job_id LEFT OUTER JOIN
>>>> history_dataset_association AS history_dataset_association_1 ON
>>>> history_dataset_association_1.id = job_to_input_dataset_1.dataset_id
>>>> LEFT OUTER JOIN dataset AS dataset_1 ON dataset_1.id =
>>>> history_dataset_association_1.dataset_id LEFT OUTER JOIN
>>>> job_to_output_dataset AS job_to_output_dataset_1 ON job.id =
>>>> job_to_output_dataset_1.job_id LEFT OUTER JOIN
>>>> history_dataset_association AS history_dataset_association_2 ON
>>>> history_dataset_association_2.id = job_to_output_dataset_1.dataset_id
>>>> LEFT OUTER JOIN dataset AS dataset_2 ON dataset_2.id =
>>>> history_dataset_association_2.dataset_id
>>>> WHERE job.state = %s
>>>> 2010-06-02 09:50:15,154 INFO sqlalchemy.engine.base.Engine.0x...0e50
>>>> ['new']
>>>> sqlalchemy.engine.base.Engine.0x...0e50 INFO 2010-06-02 09:50:15,154
>>>> ['new']
>>>> 2010-06-02 09:50:15,157 INFO sqlalchemy.pool.QueuePool.0x...0c90
>>>> Connection<_mysql.connection open to 'localhost' at
1b0894d0> being
>>>> returned to pool
>>>> sqlalchemy.pool.QueuePool.0x...0c90 INFO 2010-06-02 09:50:15,157
>>>> Connection<_mysql.connection open to 'localhost' at
1b0894d0> being
>>>> returned to pool
>>>>
>>>>
>>>> cheers
>>>> m
>>>>
>>>> --
>>>> Michael Pheasant
>>>> Software Engineer
>>>> Queensland Facility for Advanced Bioinformatics
>>>> Level 6, QBP
>>>> University of Queensland, QLD 4072
>>>> T: +61 (0)7 3346 2070
>>>> F: +61 (0)7 3346 2101
>>>>
www.qfab.org
>>>>
>>>>
>>>>
>>>> On Tue, Jun 1, 2010 at 11:24 PM, Nate Coraor<nate(a)bx.psu.edu>
wrote:
>>>>> Michael Pheasant wrote:
>>>>>> Using the run.sh script, and the default 'log_level =
DEBUG'
>>>>>> universe_wsgi.ini file setting gives a huge amount of output.
>>>>>>
>>>>>> Changing the ini to either log_level = INFO, WARNING or ERROR and
i
>>>>>> get the same output, including the INFO messages every second.
>>>>>>
>>>>>> I assumed that WARNING or ERROR would not give the INFO
>>>>>> messages; is
>>>>>> there some way to not see these?
>>>>> Hi Michael,
>>>>>
>>>>> Can you provide an example of which INFO messages still appear?
>>>>> WARNING
>>>>> is
>>>>> suppressing everything above the WARNING level for me.
>>>>>
>>>>> --nate
>>>>>
>>>>>> Cheers
>>>>>> m
>>>>>>
>>>>>> --
>>>>>> Michael Pheasant
>>>>>> Software Engineer
>>>>>> Queensland Facility for Advanced Bioinformatics
>>>>>> Level 6, QBP
>>>>>> University of Queensland, QLD 4072
>>>>>> T: +61 (0)7 3346 2070
>>>>>> F: +61 (0)7 3346 2101
>>>>>>
www.qfab.org
>>>>>> _______________________________________________
>>>>>> galaxy-dev mailing list
>>>>>> galaxy-dev(a)lists.bx.psu.edu
>>>>>>
http://lists.bx.psu.edu/listinfo/galaxy-dev
>>>>>
>>>> _______________________________________________
>>>> galaxy-dev mailing list
>>>> galaxy-dev(a)lists.bx.psu.edu
>>>>
http://lists.bx.psu.edu/listinfo/galaxy-dev
>>>>
>>>
>> _______________________________________________
>> galaxy-dev mailing list
>> galaxy-dev(a)lists.bx.psu.edu
>>
http://lists.bx.psu.edu/listinfo/galaxy-dev
>
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