Re: [galaxy-dev] Improvements to fasta_compute_length

Hello Bjoern,

Thanks very much for your contribution. We've replaced the tool with your version in change set 3264:17db30ce0486, which will soon be published to the distribution and our main public server.

On Jan 23, 2010, at 12:49 PM, Björn Grüning wrote:

Hi,

i have tried to speed up the fasta-length calculation, because it was very slow for large sequences. Find attached a new much faster tool (<1s vs. 7min for a 8MB Fasta-File) that passes all old tests.

Thanks, Bjoern < fasta_compute_length.py

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Greg Von Kuster Galaxy Development Team greg@bx.psu.edu