Hi,
The LIMS demo script is outdated as it uses an older version of SQLAlchemy which Galaxy no longer supports. I will upload an updated version of the script as soon as possible and let you know. Thank you for letting us know of this problem.
Regards rc
On Mar 1, 2010, at 11:35 AM, nsfox@uwaterloo.ca wrote:
Hi,
I have setup up Galaxy on my computer following the instructions and then proceeded to run the LIMS Demo script following the instructions on the wiki. The setup stalled ending with the following:
galaxy.jobs INFO 2010-03-01 10:51:36,928 job scheduler policy is galaxy.jobs.schedulingpolicy.roundrobin:UserRoundRobin galaxy.jobs INFO 2010-03-01 10:51:36,929 job manager started galaxy.jobs INFO 2010-03-01 10:51:37,036 job stopper started Traceback (most recent call last): File "setup_lims_demo.py", line 184, in <module> main() File "setup_lims_demo.py", line 137, in main user_list.append( create_user( app, admin_user_email, 'testuser' ) ) File "setup_lims_demo.py", line 43, in create_user user.flush() AttributeError: 'User' object has no attribute 'flush'
The error suggests to me that I missed downloading some methods or something. I have not worked with python before so I am unfamiliar as to where I would look for the flush method or how I would import/ use it to make it available.
I was wondering if you have any suggestions as to what I could be missing or what I could do to fix the error, please let me know. Any help is greatly appreciated.
Thanks,
Natalie Fox
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