details: http://www.bx.psu.edu/hg/galaxy/rev/2b0e2519f7ac changeset: 3431:2b0e2519f7ac user: Dan Blankenberg dan@bx.psu.edu date: Tue Feb 23 19:54:54 2010 -0500 description: Add gnuplot requirement tag to boxplot tool.
diffstat:
tool_conf.xml.sample | 18 +++++++++--------- tools/plotting/boxplot.xml | 3 +++ 2 files changed, 12 insertions(+), 9 deletions(-)
diffs (41 lines):
diff -r 25de793f99e5 -r 2b0e2519f7ac tool_conf.xml.sample --- a/tool_conf.xml.sample Tue Feb 23 17:58:44 2010 -0500 +++ b/tool_conf.xml.sample Tue Feb 23 19:54:54 2010 -0500 @@ -176,15 +176,15 @@ </section> <section name="NGS: QC and manipulation" id="cshl_library_information"> <label text="Generic FASTQ data" id="new_fastq" /> - <tool file="fastq/fastq_combiner.xml" /> - <tool file="fastq/fastq_groomer.xml" /> - <tool file="fastq/fastq_paired_end_joiner.xml" /> - <tool file="fastq/fastq_paired_end_splitter.xml" /> - <tool file="fastq/fastq_stats.xml" /> - <tool file="fastq/fastq_filter.xml" /> - <tool file="fastq/fastq_trimmer.xml" /> - <tool file="fastq/fastq_manipulation.xml" /> - <tool file="fastq/fastq_to_fasta.xml" /> + <tool file="fastq/fastq_combiner.xml" /> + <tool file="fastq/fastq_groomer.xml" /> + <tool file="fastq/fastq_paired_end_joiner.xml" /> + <tool file="fastq/fastq_paired_end_splitter.xml" /> + <tool file="fastq/fastq_stats.xml" /> + <tool file="fastq/fastq_filter.xml" /> + <tool file="fastq/fastq_trimmer.xml" /> + <tool file="fastq/fastq_manipulation.xml" /> + <tool file="fastq/fastq_to_fasta.xml" /> <label text="Deprecated: Generic FASTQ data" id="fastq" /> <tool file="next_gen_conversion/fastq_gen_conv.xml" /> <tool file="fastx_toolkit/fastq_quality_converter.xml" /> diff -r 25de793f99e5 -r 2b0e2519f7ac tools/plotting/boxplot.xml --- a/tools/plotting/boxplot.xml Tue Feb 23 17:58:44 2010 -0500 +++ b/tools/plotting/boxplot.xml Tue Feb 23 19:54:54 2010 -0500 @@ -1,6 +1,9 @@ <tool id="qual_stats_boxplot" name="Boxplot" version="1.0.0"> <description>of quality statistics</description> <command>gnuplot < '$gnuplot_commands' > '$output_file'</command> + <requirements> + <requirement type="binary">gnuplot</requirement> + </requirements> <inputs> <param name="input_file" type="data" format="tabular" label="Quality Statistics File"/> <param name="title" type="text" value="Box plot in Galaxy" label="Title for plot" size="50"/>