Re: [galaxy-dev] How to FTP files on Dockerized version of Galaxy instance running on DC/OS server?

Hi Devon, I tried to connect to Galaxy instance with FTP client WinSCP as follows: [image: Inline images 1] But no luck. Even I tried with the DNS (i.e. http://bioopenergalaxy. insight-centre.org/) and changing SFTP to FTP and tried with port number 21 and 8021 too. Regards, _________________________________ *Md. Rezaul Karim*, BSc, MSc Researcher, INSIGHT Centre for Data Analytics National University of Ireland, Galway IDA Business Park, Dangan, Galway, Ireland Web: http://www.reza-analytics.eu/index.html <http://139.59.184.114/index.html> On 23 June 2017 at 11:05, Md. Rezaul Karim <rezaul.karim@insight-centre. org> wrote: > Ok, thanks for the clarification. I will try again and get back to you. > > > > On Jun 23, 2017 11:03 AM, "Devon Ryan" <dpryan(a)dpryan.com&gt; wrote: > >> If your user is an admin then yes. Each user can use their normal >> login credentials. >> -- >> Devon Ryan, Ph.D. >> Email: dpryan(a)dpryan.com >> Data Manager/Bioinformatician >> Max Planck Institute of Immunobiology and Epigenetics >> Stübeweg 51 >> 79108 Freiburg >> Germany >> >> >> On Fri, Jun 23, 2017 at 11:45 AM, Md. Rezaul Karim >> <rezaul.karim(a)insight-centre.org&gt; wrote: >> > Did you mean using the admin user email id and the password? >> > >> > Regards, >> > _________________________________ >> > Md. Rezaul Karim, BSc, MSc >> > Researcher, INSIGHT Centre for Data Analytics >> > National University of Ireland, Galway >> > IDA Business Park, Dangan, Galway, Ireland >> > Web: http://www.reza-analytics.eu/index.html >> > >> > On 23 June 2017 at 10:44, Devon Ryan <dpryan(a)dpryan.com&gt; wrote: >> >> >> >> You should be able to login with the email address and password that >> >> you use for Galaxy then. That works for my instances at least. >> >> -- >> >> Devon Ryan, Ph.D. >> >> Email: dpryan(a)dpryan.com >> >> Data Manager/Bioinformatician >> >> Max Planck Institute of Immunobiology and Epigenetics >> >> Stübeweg 51 >> >> 79108 Freiburg >> >> Germany >> >> >> >> >> >> On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim >> >> <rezaul.karim(a)insight-centre.org&gt; wrote: >> >> > Hi Devon, >> >> > >> >> > Yes, I'm running the galaxy-docker-stable from Björn and my >> RiboGalaxy >> >> > is >> >> > built on top of it (version 17.05). My system admin has provided me >> with >> >> > the >> >> > IP address of this DNS and when I issue the FTP command as follows: >> >> > >> >> > asif@ubuntu:~$ ftp 10.196.106.60 8021 >> >> > >> >> > It shows: >> >> > >> >> > Connected to 10.196.106.60. >> >> > 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2] >> >> > Name (10.196.106.60:asif): >> >> > >> >> > It seems ProFTPD is already configured. While running the container, >> >> > port >> >> > 8021 was mapped to 21. >> >> > >> >> > >> >> > Regards, >> >> > _________________________________ >> >> > Md. Rezaul Karim, BSc, MSc >> >> > Researcher, INSIGHT Centre for Data Analytics >> >> > National University of Ireland, Galway >> >> > IDA Business Park, Dangan, Galway, Ireland >> >> > Web: http://www.reza-analytics.eu/index.html >> >> > >> >> > On 23 June 2017 at 10:30, Devon Ryan <dpryan(a)dpryan.com&gt; wrote: >> >> >> >> >> >> Are you using galaxy-docker-stable from Björn >> >> >> (https://github.com/bgruening/docker-galaxy-stable) or did you >> make >> >> >> your own dockerized-Galaxy version? Björn's runs proFTPd by >> default, >> >> >> so if you're using it then ensure that's running in the container. >> >> >> >> >> >> Devon >> >> >> -- >> >> >> Devon Ryan, Ph.D. >> >> >> Email: dpryan(a)dpryan.com >> >> >> Data Manager/Bioinformatician >> >> >> Max Planck Institute of Immunobiology and Epigenetics >> >> >> Stübeweg 51 >> >> >> 79108 Freiburg >> >> >> Germany >> >> >> >> >> >> >> >> >> On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim >> >> >> <rezaul.karim(a)insight-centre.org&gt; wrote: >> >> >> > Dear All, >> >> >> > >> >> >> > I have Dockerized the Galaxy and it's running as a containerized >> >> >> > application >> >> >> > on the DC/OS server. It can be accessed at >> >> >> > http://bioopenergalaxy.insight-centre.org/. >> >> >> > >> >> >> > However, I'm wondering how to FTP files on it. Please note that I >> >> >> > have >> >> >> > the >> >> >> > following configuration on the galaxy.ini file: >> >> >> > >> >> >> > # This should point to a directory containing subdirectories >> matching >> >> >> > users' >> >> >> > identifier (defaults to e-mail), where Galaxy will look for >> files. >> >> >> > ftp_upload_dir = /export/ftp >> >> >> > >> >> >> > # This should be the hostname of your FTP server, which will be >> >> >> > provided >> >> >> > to >> >> >> > users in the help text. >> >> >> > ftp_upload_site = bioopenergalaxy.insight-centre.org >> >> >> > >> >> >> > >> >> >> > Any help or pointer would be highly appreciated. >> >> >> > >> >> >> > >> >> >> > >> >> >> > >> >> >> > Regards, >> >> >> > _________________________________ >> >> >> > Md. Rezaul Karim, BSc, MSc >> >> >> > Researcher, INSIGHT Centre for Data Analytics >> >> >> > National University of Ireland, Galway >> >> >> > IDA Business Park, Dangan, Galway, Ireland >> >> >> > Web: http://www.reza-analytics.eu/index.html >> >> >> > >> >> >> > ___________________________________________________________ >> >> >> > Please keep all replies on the list by using "reply all" >> >> >> > in your mail client. To manage your subscriptions to this >> >> >> > and other Galaxy lists, please use the interface at: >> >> >> > https://lists.galaxyproject.org/ >> >> >> > >> >> >> > To search Galaxy mailing lists use the unified search at: >> >> >> > http://galaxyproject.org/search/ >> >> > >> >> > >> > >> > >> >