Do you get an error of some sort?
--
Devon Ryan, Ph.D.
Email: dpryan(a)dpryan.com
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany
<devon.ryan(a)dzne.de>
On Fri, Jun 23, 2017 at 12:33 PM, Md. Rezaul Karim <
rezaul.karim(a)insight-centre.org> wrote:
Hi Devon,
I tried to connect to Galaxy instance with FTP client WinSCP as follows:
[image: Inline images 1]
But no luck. Even I tried with the DNS (i.e.
http://bioopenergalaxy.
insight-centre.org/) and changing SFTP to FTP and tried with port number
21 and 8021 too.
Regards,
_________________________________
*Md. Rezaul Karim*, BSc, MSc
Researcher, INSIGHT Centre for Data Analytics
National University of Ireland, Galway
IDA Business Park, Dangan, Galway, Ireland
Web:
http://www.reza-analytics.eu/index.html
<
http://139.59.184.114/index.html>
On 23 June 2017 at 11:05, Md. Rezaul Karim <rezaul.karim@insight-centre.
org> wrote:
> Ok, thanks for the clarification. I will try again and get back to you.
>
>
>
> On Jun 23, 2017 11:03 AM, "Devon Ryan" <dpryan(a)dpryan.com> wrote:
>
>> If your user is an admin then yes. Each user can use their normal
>> login credentials.
>> --
>> Devon Ryan, Ph.D.
>> Email: dpryan(a)dpryan.com
>> Data Manager/Bioinformatician
>> Max Planck Institute of Immunobiology and Epigenetics
>> Stübeweg 51
>> 79108 Freiburg
>> Germany
>>
>>
>> On Fri, Jun 23, 2017 at 11:45 AM, Md. Rezaul Karim
>> <rezaul.karim(a)insight-centre.org> wrote:
>> > Did you mean using the admin user email id and the password?
>> >
>> > Regards,
>> > _________________________________
>> > Md. Rezaul Karim, BSc, MSc
>> > Researcher, INSIGHT Centre for Data Analytics
>> > National University of Ireland, Galway
>> > IDA Business Park, Dangan, Galway, Ireland
>> > Web:
http://www.reza-analytics.eu/index.html
>> >
>> > On 23 June 2017 at 10:44, Devon Ryan <dpryan(a)dpryan.com> wrote:
>> >>
>> >> You should be able to login with the email address and password that
>> >> you use for Galaxy then. That works for my instances at least.
>> >> --
>> >> Devon Ryan, Ph.D.
>> >> Email: dpryan(a)dpryan.com
>> >> Data Manager/Bioinformatician
>> >> Max Planck Institute of Immunobiology and Epigenetics
>> >> Stübeweg 51
>> >> 79108 Freiburg
>> >> Germany
>> >>
>> >>
>> >> On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim
>> >> <rezaul.karim(a)insight-centre.org> wrote:
>> >> > Hi Devon,
>> >> >
>> >> > Yes, I'm running the galaxy-docker-stable from Björn and my
>> RiboGalaxy
>> >> > is
>> >> > built on top of it (version 17.05). My system admin has provided
me
>> with
>> >> > the
>> >> > IP address of this DNS and when I issue the FTP command as
follows:
>> >> >
>> >> > asif@ubuntu:~$ ftp 10.196.106.60 8021
>> >> >
>> >> > It shows:
>> >> >
>> >> > Connected to 10.196.106.60.
>> >> > 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP)
[::ffff:172.17.0.2]
>> >> > Name (10.196.106.60:asif):
>> >> >
>> >> > It seems ProFTPD is already configured. While running the
container,
>> >> > port
>> >> > 8021 was mapped to 21.
>> >> >
>> >> >
>> >> > Regards,
>> >> > _________________________________
>> >> > Md. Rezaul Karim, BSc, MSc
>> >> > Researcher, INSIGHT Centre for Data Analytics
>> >> > National University of Ireland, Galway
>> >> > IDA Business Park, Dangan, Galway, Ireland
>> >> > Web:
http://www.reza-analytics.eu/index.html
>> >> >
>> >> > On 23 June 2017 at 10:30, Devon Ryan <dpryan(a)dpryan.com>
wrote:
>> >> >>
>> >> >> Are you using galaxy-docker-stable from Björn
>> >> >> (
https://github.com/bgruening/docker-galaxy-stable) or did you
>> make
>> >> >> your own dockerized-Galaxy version? Björn's runs proFTPd
by
>> default,
>> >> >> so if you're using it then ensure that's running in the
container.
>> >> >>
>> >> >> Devon
>> >> >> --
>> >> >> Devon Ryan, Ph.D.
>> >> >> Email: dpryan(a)dpryan.com
>> >> >> Data Manager/Bioinformatician
>> >> >> Max Planck Institute of Immunobiology and Epigenetics
>> >> >> Stübeweg 51
>> >> >> 79108 Freiburg
>> >> >> Germany
>> >> >>
>> >> >>
>> >> >> On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim
>> >> >> <rezaul.karim(a)insight-centre.org> wrote:
>> >> >> > Dear All,
>> >> >> >
>> >> >> > I have Dockerized the Galaxy and it's running as a
containerized
>> >> >> > application
>> >> >> > on the DC/OS server. It can be accessed at
>> >> >> >
http://bioopenergalaxy.insight-centre.org/.
>> >> >> >
>> >> >> > However, I'm wondering how to FTP files on it. Please
note that I
>> >> >> > have
>> >> >> > the
>> >> >> > following configuration on the galaxy.ini file:
>> >> >> >
>> >> >> > # This should point to a directory containing
subdirectories
>> matching
>> >> >> > users'
>> >> >> > identifier (defaults to e-mail), where Galaxy will look
for
>> files.
>> >> >> > ftp_upload_dir = /export/ftp
>> >> >> >
>> >> >> > # This should be the hostname of your FTP server, which
will be
>> >> >> > provided
>> >> >> > to
>> >> >> > users in the help text.
>> >> >> > ftp_upload_site =
bioopenergalaxy.insight-centre.org
>> >> >> >
>> >> >> >
>> >> >> > Any help or pointer would be highly appreciated.
>> >> >> >
>> >> >> >
>> >> >> >
>> >> >> >
>> >> >> > Regards,
>> >> >> > _________________________________
>> >> >> > Md. Rezaul Karim, BSc, MSc
>> >> >> > Researcher, INSIGHT Centre for Data Analytics
>> >> >> > National University of Ireland, Galway
>> >> >> > IDA Business Park, Dangan, Galway, Ireland
>> >> >> > Web:
http://www.reza-analytics.eu/index.html
>> >> >> >
>> >> >> >
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