Sorry for the delayed response - I am not really an expert on Galaxy's egg stuff - but I believe running `python scripts/fetch_eggs.py` before starting Galaxy usually fixes these problems for reasons I don't understand. One probably shouldn't need to manually install mock or pycrypto though.
Sorry for the problems and thanks for using Galaxy (and upgrading)!
-John
On Thu, Jan 15, 2015 at 10:42 AM, Ulf Schaefer Ulf.Schaefer@phe.gov.uk wrote:
Hi all
For what it's worth, I manually installed mock (and pycrypto because that was the next thing it complained about) and it worked after that.
Ulf
On 14/01/15 14:23, Ulf Schaefer wrote:
Hi all
After the announcements this morning, I upgraded to the latest stable release as suggested (latest_2015.01.13).
Our server is now not starting with the following error message. Any ideas what I might be doing wrong?
Thanks a lot Ulf
galaxy.eggs DEBUG 2015-01-14 14:10:25,272 Fetched http://eggs.galaxyproject.org/bioblend/bioblend-0.4.2-py2.6.egg galaxy.eggs ERROR 2015-01-14 14:10:25,290 One of Galaxy's managed eggs depends on something which is missing, this is almost certainly a bug in the egg distribution. galaxy.eggs ERROR 2015-01-14 14:10:25,291 Dependency "bioblend" requires "mock" Traceback (most recent call last): File "./scripts/paster.py", line 33, in <module> serve.run() File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 1049, in run invoke(command, command_name, options, args[1:]) File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 1055, in invoke exit_code = runner.run(args) File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 220, in run result = self.command() File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 643, in command app = loadapp( app_spec, name=app_name, relative_to=base, global_conf=vars) File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 350, in loadapp return loadobj(APP, uri, name=name, **kw) File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 375, in loadobj return context.create() File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 813, in create return self.object_type.invoke(self) File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 249, in invoke return fix_call(context.object, context.global_conf, **context.local_conf) File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 97, in fix_call val = callable(*args, **kw) File "/home/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 54, in app_factory webapp.add_ui_controllers( 'galaxy.webapps.galaxy.controllers', app ) File "/home/galaxy/galaxy-dist/lib/galaxy/web/framework/webapp.py", line 119, in add_ui_controllers module = import_module( module_name ) File "/home/galaxy/galaxy-dist/lib/galaxy/util/backports/importlib/__init__.py", line 37, in import_module __import__(name) File "/home/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/cloudlaunch.py", line 21, in <module> eggs.require('bioblend') File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 411, in require return c[req.project_name].require() File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 239, in require dists = self.resolve() File "/home/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 170, in resolve dists = pkg_resources.working_set.resolve( ( self.distribution.as_requirement(), ), env, self.fetch ) File "/home/galaxy/galaxy-dist/lib/pkg_resources.py", line 569, in resolve raise VersionConflict(dist,req) # XXX put more info here pkg_resources.VersionConflict: (bioblend 0.4.2 (/home/galaxy/galaxy-dist/eggs/bioblend-0.4.2-py2.6.egg), Requirement.parse('mock'))
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