Hi Peter,
Thanks for the zippy response. I had failed to previously install those wrappers at all, it looks like. I copied my galaxy-dist folder to another host to test and forgot to install some of the shed tools.
Much appreciated!
Carrie Ganote ________________________________________ From: Peter Cock [p.j.a.cock@googlemail.com] Sent: Wednesday, October 30, 2013 5:59 PM To: Ganote, Carrie L Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: Blastdb and blastdbp datatypes not enforced
On Wed, Oct 30, 2013 at 9:22 PM, Ganote, Carrie L cganote@iu.edu wrote:
Hi List,
It seems that the blastdb and blastdbp data format is not respected on my local install; is it just not generally defined, or am I missing something in /lib/galaxy/datatypes or in datatypes_conf?
The most recent blasp wrapper includes this for the input parameter: type="data" format="blastdbp"
When I choose the BLAST Database from history option for db, I get every valid dataset in my history in the list. Is this because it's a composite set?
Thanks for any tips,
Carrie Ganote
You need to install the blastdbn and blastdbp datatypes, available here: http://toolshed.g2.bx.psu.edu/view/devteam/blast_datatypes
If yours is an old Galaxy instance, the migration scripts might have done that for you (the BLAST+ wrappers used to be included within Galaxy), but at that time the blast_datatypes just included blastxml support.
Peter