You'll need to make sure that bedtools is in your Galaxy user's path. Best, J. On Jul 9, 2013, at 6:40 PM, Perez, Ricardo wrote:
Dear all,
As I was trying to do visualize my data set in trackster, I get the following error:
/bin/sh: 1: bedtools: not found sort: fflush failed: standard output: Broken pipe sort: write error needLargeMem: trying to allocate 0 bytes (limit: 100000000000)
When doing a sudo find / -name "bedtools" in my system, I get the following output: /usr/share/bedtools /usr/share/doc/bedtools
Do I have bedtools installed in the wrong place?
Thank you for your help, --Ricardo Perez ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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