Galaxy July 20, 2012 Distribution & News Brief
*Complete News Brief http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_07_20*
*Highlights: http://wiki.g2.bx.psu.edu/News/Jul202012%20Distribution%20News%20Brief*
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*Freebayes *has moved from the /Galaxy distribution to the Galaxy's Main Tool Shed/
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*EMBOSS* version 5.0.0 tool dependencies in the emboss_5 repository of the Galaxy Main Tool Shed updated to include information for automatically installing.
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*Tool Shed* now also supports specifying the third party tool dependencies to be automatically installed in new repositories
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*Admin Genome Indexing* is now in /BETA/. Download, index, and track progress right from the admin UI!
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*Improved Error Handling* that captures EXIT codes, STDOUT, and STDERR from tools in XML. Be sure to read full details.
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*TopHat2/Bowtie2* latest support includes option to 'report discordant pairs', updated tests, and more preset options.
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*Trackster* new parameter space visualization. /Includes BRAND NEW Features!!/ More details coming soon, but give a test drive now.
new: % hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist upgrade: % hg pull -u -r ec29ce8e27a1
*Thanks for using Galaxy!* We hope to see everyone in /Chicago/ @ *GCC2012*!!
The Galaxy Team