The tool to fetch data isn't being run on your submit node but instead on the cluster, which is the problem. It's a fairly easy to solve problem: - In your job_conf you'll need to define a way to run jobs locally (either via local runner, or via a special queue dedicated to your submit node) - Then you'll need to specify that the upload tool is forced to that job runner. Something like this (untested, probably invalid xml... ) <plugins workers="4"> <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" /> <!-- your torque runner here --> </plugins> <destinations default="cluster"> <destination id="local" runner="local"> <!-- your cluster dest here --> </destinations> <tools> <!-- we force the upload tool to the local job runner, thereby bypassing the issue of internet access on the cluster nodes --> <tool id="upload1" destination="local" /> </tools> Cheers, Eric 2015-01-22 13:51 GMT-06:00 Fernandez Edgar <edgar.fernandez@umontreal.ca>:
Hello gents,
I started this new thread because I have a showstopper for my installation of galaxy.
Here’s my situation:
1. I have a galaxy server that has internet access.
2. My galaxy server is also my torque server and my only torque submit node.
3. I have three torque compute nodes that DOESN’T have internet access.
Now, I’ve tried uploading a file (larger than 2Gb) via and URL and it *fails*.
However, I’ve added my galaxy server as a compute node and re-tried to upload the same file and I made sure the job will run on that machine and it *works*.
Now, my compute nodes are in a network that is completely protected from the outside world.
So no internet access.
What are my option in this case?
Cordialement / Regards,
*Edgar Fernandez*
System Administrator (Linux)
Direction Générale des Technologies de l'Information et de la Communication
( Bur. : *1-514-343-6111 poste 16568*
*Université de Montréal*
PAVILLON ROGER-GAUDRY, bureau X-218
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