Hi,
I installed the latest set of changes to Galaxy, and now the Galaxy server will not start up. I am hoping someone can point me to the source of the problem and/or a fix.
This morning my Galaxy server was running just fine. I did a hg incoming and was told that a fair number of changes were waiting to be applied, changeset 13772 through changeset 14309. Fine. I did hg pull -u and got searching for changes adding changesets adding manifests adding file changes added 538 changesets with 1738 changes to 542 files 473 files updated, 0 files merged, 152 files removed, 0 files unresolved Fine. However, now my Galaxy server will not start up and run. On sh run.sh --daemon the server dies with the following produced in paster.log where /birl2/Galaxy/galaxy-dist is the name of the installation directory.
-- begin paster.log --
Traceback (most recent call last): File "./scripts/paster.py", line 33, in <module> serve.run() File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 10 49, in run invoke(command, command_name, options, args[1:]) File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 10 55, in invoke exit_code = runner.run(args) File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 22 0, in run result = self.command() File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 64 3, in command app = loadapp( app_spec, name=app_name, relative_to=base, global_conf=vars) File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 350, in loadapp return loadobj(APP, uri, name=name, **kw) File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 374, in loadobj global_conf=global_conf) File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 399, in loadcontext global_conf=global_conf) File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 423, in _loadconfig return loader.get_context(object_type, name, global_conf) File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 561, in get_context section) File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 620, in _context_from_explicit value = import_string(found_expr) File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 125, in import_string return pkg_resources.EntryPoint.parse("x=" + s).load(False) File "/birl2/Galaxy/galaxy-dist/lib/pkg_resources.py", line 1954, in load entry = __import__(self.module_name, globals(),globals(), ['__name__']) File "/birl2/Galaxy/galaxy-dist/lib/galaxy/web/__init__.py", line 4, in <modul e> from framework import expose File "/birl2/Galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py", line 48 , in <module> eggs.require( "amqp" ) File "/birl2/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 414, in req uire raise EggNotFetchable( str( [ egg.name for egg in e.eggs ] ) ) galaxy.eggs.EggNotFetchable: ['amqp'] Removing PID file paster.pid
-- end paster.log --
The above is the complete content of paster.log.
Anyone have any idea what the problem is? More importantly, how do I fix the problem and get Galaxy running again?