11:02 a.m.
Michael Siebauer wrote:
Is there also a way to supress these:
192.168.3.61 - - [07/Sep/2010:13:05:48 +0200] "POST
/root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history"
"Mozilla/5.0 (X11; U; Linux x86_64; en-US; rv:1.9.2.8) Gecko/20100723
Ubuntu/10.04 (lucid) Firefox/3.6.8"
Logging Messages?
Just the hits to history_item_updates, or all Apache-style web logging?
--nate
Thx Michael
Am 06/02/2010 03:15 AM, schrieb Michael Pheasant:
> Thanks, that fixed it, they were uncommented!
> CHeers
> m
>
> --
> Michael Pheasant
> Software Engineer
> Queensland Facility for Advanced Bioinformatics
> Level 6, QBP
> University of Queensland, QLD 4072
> T: +61 (0)7 3346 2070
> F: +61 (0)7 3346 2101
> www.qfab.org
>
>
>
> On Wed, Jun 2, 2010 at 9:56 AM, James Taylor<james(a)bx.psu.edu> wrote:
>> Have you uncommented either of:
>>
>> #database_engine_option_echo = true
>> #database_engine_option_echo_pool = true
>>
>> In you universe_wsgi.ini?
>>
>> On Jun 1, 2010, at 7:53 PM, Michael Pheasant wrote:
>>
>>> using run script with single web server/jobrunner:
>>> universe_wsgi.ini:
>>> log_level = WARNING
>>> enable_job_running = True
>>>
>>> *) During the startup sequence there is a bunch of INFO stuff;
>>>
>>> 2010-06-02 09:49:55,321 INFO sqlalchemy.pool.QueuePool.0x...8410
>>> Created new connection<_mysql.connection open to 'localhost' at
>>> 1aab1730>
>>> sqlalchemy.pool.QueuePool.0x...8410 INFO 2010-06-02 09:49:55,321
>>> Created new connection<_mysql.connection open to 'localhost' at
>>> 1aab1730>
>>> 2010-06-02 09:49:55,321 INFO sqlalchemy.pool.QueuePool.0x...8410
>>> Connection<_mysql.connection open to 'localhost' at 1aab1730>
checked
>>> out from pool
>>> sqlalchemy.pool.QueuePool.0x...8410 INFO 2010-06-02 09:49:55,321
>>> Connection<_mysql.connection open to 'localhost' at 1aab1730>
checked
>>> out from pool
>>> 2010-06-02 09:49:55,322 INFO sqlalchemy.engine.base.Engine.0x...85d0
>>> SHOW VARIABLES LIKE 'character_set%%'
>>> sqlalchemy.engine.base.Engine.0x...85d0 INFO 2010-06-02 09:49:55,322
>>> SHOW VARIABLES LIKE 'character_set%%'
>>> 2010-06-02 09:49:55,322 INFO sqlalchemy.engine.base.Engine.0x...85d0 ()
>>> sqlalchemy.engine.base.Engine.0x...85d0 INFO 2010-06-02 09:49:55,322 ()
>>> 2010-06-02 09:49:55,323 INFO sqlalchemy.engine.base.Engine.0x...85d0
>>> SHOW VARIABLES LIKE 'sql_mode'
>>> sqlalchemy.engine.base.Engine.0x...85d0 INFO 2010-06-02 09:49:55,323
>>> SHOW VARIABLES LIKE 'sql_mode'
>>> 2010-06-02 09:49:55,323 INFO sqlalchemy.engine.base.Engine.0x...85d0 ()
>>> sqlalchemy.engine.base.Engine.0x...85d0 INFO 2010-06-02 09:49:55,323 ()
>>> 2010-06-02 09:49:55,348 INFO sqlalchemy.engine.base.Engine.0x...85d0
>>> SHOW CREATE TABLE dataset
>>> sqlalchemy.engine.base.Engine.0x...85d0 INFO 2010-06-02 09:49:55,348
>>> SHOW CREATE TABLE dataset
>>> 2010-06-02 09:49:55,348 INFO sqlalchemy.engine.base.Engine.0x...85d0 ()
>>>
>>>
>>> Then every second there is the database ping for jobs;
>>>
>>> sqlalchemy.engine.base.Engine.0x...0e50 INFO 2010-06-02 09:50:15,153
>>> SELECT job.id AS job_id, job.create_time AS job_create_time,
>>> job.update_time AS job_update_time, job.history_id AS job_history_id,
>>> job.library_folder_id AS job_library_folder_id, job.tool_id AS
>>> job_tool_id, job.tool_version AS job_tool_version, job.state AS
>>> job_state, job.info AS job_info, job.command_line AS job_command_line,
>>> job.param_filename AS job_param_filename, job.runner_name AS
>>> job_runner_name_1, job.stdout AS job_stdout, job.stderr AS job_stderr,
>>> job.traceback AS job_traceback, job.session_id AS job_session_id,
>>> job.job_runner_name AS job_job_runner_name, job.job_runner_external_id
>>> AS job_job_runner_external_id,
>>> library_dataset_dataset_association_1.id AS
>>> library_dataset_dataset_association_1_id,
>>> library_dataset_dataset_association_1.library_dataset_id AS
>>> library_dataset_dataset_association_1_library_dataset_id,
>>> library_dataset_dataset_association_1.dataset_id AS
>>> library_dataset_dataset_association_1_dataset_id,
>>> library_dataset_dataset_association_1.create_time AS
>>> library_dataset_dataset_association_1_create_time,
>>> library_dataset_dataset_association_1.update_time AS
>>> library_dataset_dataset_association_1_update_time,
>>>
>>>
library_dataset_dataset_association_1.copied_from_history_dataset_association_id
>>>
>>> AS
>>>
library_dataset_dataset_association_1_copied_from_history_dataset_association_id,
>>>
>>>
>>>
library_dataset_dataset_association_1.copied_from_library_dataset_dataset_association_id
>>>
>>> AS
>>>
library_dataset_dataset_association_1_copied_from_library_dataset_dataset_association_id,
>>>
>>> library_dataset_dataset_association_1.name AS
>>> library_dataset_dataset_association_1_name,
>>> library_dataset_dataset_association_1.info AS
>>> library_dataset_dataset_association_1_info,
>>> library_dataset_dataset_association_1.blurb AS
>>> library_dataset_dataset_association_1_blurb,
>>> library_dataset_dataset_association_1.peek AS
>>> library_dataset_dataset_association_1_peek,
>>> library_dataset_dataset_association_1.extension AS
>>> library_dataset_dataset_association_1_extension,
>>> library_dataset_dataset_association_1.metadata AS
>>> library_dataset_dataset_association_1_metadata,
>>> library_dataset_dataset_association_1.parent_id AS
>>> library_dataset_dataset_association_1_parent_id,
>>> library_dataset_dataset_association_1.designation AS
>>> library_dataset_dataset_association_1_designation,
>>> library_dataset_dataset_association_1.deleted AS
>>> library_dataset_dataset_association_1_deleted,
>>> library_dataset_dataset_association_1.visible AS
>>> library_dataset_dataset_association_1_visible,
>>> library_dataset_dataset_association_1.user_id AS
>>> library_dataset_dataset_association_1_user_id,
>>> library_dataset_dataset_association_1.message AS
>>> library_dataset_dataset_association_1_message,
>>> job_to_output_library_dataset_1.id AS
>>> job_to_output_library_dataset_1_id,
>>> job_to_output_library_dataset_1.job_id AS
>>> job_to_output_library_dataset_1_job_id,
>>> job_to_output_library_dataset_1.ldda_id AS
>>> job_to_output_library_dataset_1_ldda_id,
>>> job_to_output_library_dataset_1.name AS
>>> job_to_output_library_dataset_1_name, dataset_1.id AS dataset_1_id,
>>> dataset_1.create_time AS dataset_1_create_time, dataset_1.update_time
>>> AS dataset_1_update_time, dataset_1.state AS dataset_1_state,
>>> dataset_1.deleted AS dataset_1_deleted, dataset_1.purged AS
>>> dataset_1_purged, dataset_1.purgable AS dataset_1_purgable,
>>> dataset_1.external_filename AS dataset_1_external_filename,
>>> dataset_1._extra_files_path AS dataset_1__extra_files_path,
>>> dataset_1.file_size AS dataset_1_file_size,
>>> history_dataset_association_1.id AS history_dataset_association_1_id,
>>> history_dataset_association_1.history_id AS
>>> history_dataset_association_1_history_id,
>>> history_dataset_association_1.dataset_id AS
>>> history_dataset_association_1_dataset_id,
>>> history_dataset_association_1.create_time AS
>>> history_dataset_association_1_create_time,
>>> history_dataset_association_1.update_time AS
>>> history_dataset_association_1_update_time,
>>> history_dataset_association_1.copied_from_history_dataset_association_id
>>>
>>> AS
>>> history_dataset_association_1_copied_from_history_dataset_association_id,
>>>
>>>
>>>
history_dataset_association_1.copied_from_library_dataset_dataset_association_id
>>>
>>> AS
>>>
history_dataset_association_1_copied_from_library_dataset_dataset_association_id,
>>>
>>> history_dataset_association_1.hid AS
>>> history_dataset_association_1_hid, history_dataset_association_1.name
>>> AS history_dataset_association_1_name,
>>> history_dataset_association_1.info AS
>>> history_dataset_association_1_info,
>>> history_dataset_association_1.blurb AS
>>> history_dataset_association_1_blurb,
>>> history_dataset_association_1.peek AS
>>> history_dataset_association_1_peek,
>>> history_dataset_association_1.extension AS
>>> history_dataset_association_1_extension,
>>> history_dataset_association_1.metadata AS
>>> history_dataset_association_1_metadata,
>>> history_dataset_association_1.parent_id AS
>>> history_dataset_association_1_parent_id,
>>> history_dataset_association_1.designation AS
>>> history_dataset_association_1_designation,
>>> history_dataset_association_1.deleted AS
>>> history_dataset_association_1_deleted,
>>> history_dataset_association_1.visible AS
>>> history_dataset_association_1_visible, job_to_input_dataset_1.id AS
>>> job_to_input_dataset_1_id, job_to_input_dataset_1.job_id AS
>>> job_to_input_dataset_1_job_id, job_to_input_dataset_1.dataset_id AS
>>> job_to_input_dataset_1_dataset_id, job_to_input_dataset_1.name AS
>>> job_to_input_dataset_1_name, dataset_2.id AS dataset_2_id,
>>> dataset_2.create_time AS dataset_2_create_time, dataset_2.update_time
>>> AS dataset_2_update_time, dataset_2.state AS dataset_2_state,
>>> dataset_2.deleted AS dataset_2_deleted, dataset_2.purged AS
>>> dataset_2_purged, dataset_2.purgable AS dataset_2_purgable,
>>> dataset_2.external_filename AS dataset_2_external_filename,
>>> dataset_2._extra_files_path AS dataset_2__extra_files_path,
>>> dataset_2.file_size AS dataset_2_file_size,
>>> history_dataset_association_2.id AS history_dataset_association_2_id,
>>> history_dataset_association_2.history_id AS
>>> history_dataset_association_2_history_id,
>>> history_dataset_association_2.dataset_id AS
>>> history_dataset_association_2_dataset_id,
>>> history_dataset_association_2.create_time AS
>>> history_dataset_association_2_create_time,
>>> history_dataset_association_2.update_time AS
>>> history_dataset_association_2_update_time,
>>> history_dataset_association_2.copied_from_history_dataset_association_id
>>>
>>> AS
>>> history_dataset_association_2_copied_from_history_dataset_association_id,
>>>
>>>
>>>
history_dataset_association_2.copied_from_library_dataset_dataset_association_id
>>>
>>> AS
>>>
history_dataset_association_2_copied_from_library_dataset_dataset_association_id,
>>>
>>> history_dataset_association_2.hid AS
>>> history_dataset_association_2_hid, history_dataset_association_2.name
>>> AS history_dataset_association_2_name,
>>> history_dataset_association_2.info AS
>>> history_dataset_association_2_info,
>>> history_dataset_association_2.blurb AS
>>> history_dataset_association_2_blurb,
>>> history_dataset_association_2.peek AS
>>> history_dataset_association_2_peek,
>>> history_dataset_association_2.extension AS
>>> history_dataset_association_2_extension,
>>> history_dataset_association_2.metadata AS
>>> history_dataset_association_2_metadata,
>>> history_dataset_association_2.parent_id AS
>>> history_dataset_association_2_parent_id,
>>> history_dataset_association_2.designation AS
>>> history_dataset_association_2_designation,
>>> history_dataset_association_2.deleted AS
>>> history_dataset_association_2_deleted,
>>> history_dataset_association_2.visible AS
>>> history_dataset_association_2_visible, job_to_output_dataset_1.id AS
>>> job_to_output_dataset_1_id, job_to_output_dataset_1.job_id AS
>>> job_to_output_dataset_1_job_id, job_to_output_dataset_1.dataset_id AS
>>> job_to_output_dataset_1_dataset_id, job_to_output_dataset_1.name AS
>>> job_to_output_dataset_1_name
>>> FROM job LEFT OUTER JOIN job_to_output_library_dataset AS
>>> job_to_output_library_dataset_1 ON job.id =
>>> job_to_output_library_dataset_1.job_id LEFT OUTER JOIN
>>> library_dataset_dataset_association AS
>>> library_dataset_dataset_association_1 ON
>>> library_dataset_dataset_association_1.id =
>>> job_to_output_library_dataset_1.ldda_id LEFT OUTER JOIN
>>> job_to_input_dataset AS job_to_input_dataset_1 ON job.id =
>>> job_to_input_dataset_1.job_id LEFT OUTER JOIN
>>> history_dataset_association AS history_dataset_association_1 ON
>>> history_dataset_association_1.id = job_to_input_dataset_1.dataset_id
>>> LEFT OUTER JOIN dataset AS dataset_1 ON dataset_1.id =
>>> history_dataset_association_1.dataset_id LEFT OUTER JOIN
>>> job_to_output_dataset AS job_to_output_dataset_1 ON job.id =
>>> job_to_output_dataset_1.job_id LEFT OUTER JOIN
>>> history_dataset_association AS history_dataset_association_2 ON
>>> history_dataset_association_2.id = job_to_output_dataset_1.dataset_id
>>> LEFT OUTER JOIN dataset AS dataset_2 ON dataset_2.id =
>>> history_dataset_association_2.dataset_id
>>> WHERE job.state = %s
>>> 2010-06-02 09:50:15,154 INFO sqlalchemy.engine.base.Engine.0x...0e50
>>> ['new']
>>> sqlalchemy.engine.base.Engine.0x...0e50 INFO 2010-06-02 09:50:15,154
>>> ['new']
>>> 2010-06-02 09:50:15,157 INFO sqlalchemy.pool.QueuePool.0x...0c90
>>> Connection<_mysql.connection open to 'localhost' at 1b0894d0>
being
>>> returned to pool
>>> sqlalchemy.pool.QueuePool.0x...0c90 INFO 2010-06-02 09:50:15,157
>>> Connection<_mysql.connection open to 'localhost' at 1b0894d0>
being
>>> returned to pool
>>>
>>>
>>> cheers
>>> m
>>>
>>> --
>>> Michael Pheasant
>>> Software Engineer
>>> Queensland Facility for Advanced Bioinformatics
>>> Level 6, QBP
>>> University of Queensland, QLD 4072
>>> T: +61 (0)7 3346 2070
>>> F: +61 (0)7 3346 2101
>>> www.qfab.org
>>>
>>>
>>>
>>> On Tue, Jun 1, 2010 at 11:24 PM, Nate Coraor<nate(a)bx.psu.edu> wrote:
>>>> Michael Pheasant wrote:
>>>>> Using the run.sh script, and the default 'log_level = DEBUG'
>>>>> universe_wsgi.ini file setting gives a huge amount of output.
>>>>>
>>>>> Changing the ini to either log_level = INFO, WARNING or ERROR and i
>>>>> get the same output, including the INFO messages every second.
>>>>>
>>>>> I assumed that WARNING or ERROR would not give the INFO messages; is
>>>>> there some way to not see these?
>>>> Hi Michael,
>>>>
>>>> Can you provide an example of which INFO messages still appear?
>>>> WARNING
>>>> is
>>>> suppressing everything above the WARNING level for me.
>>>>
>>>> --nate
>>>>
>>>>> Cheers
>>>>> m
>>>>>
>>>>> --
>>>>> Michael Pheasant
>>>>> Software Engineer
>>>>> Queensland Facility for Advanced Bioinformatics
>>>>> Level 6, QBP
>>>>> University of Queensland, QLD 4072
>>>>> T: +61 (0)7 3346 2070
>>>>> F: +61 (0)7 3346 2101
>>>>> www.qfab.org
>>>>> _______________________________________________
>>>>> galaxy-dev mailing list
>>>>> galaxy-dev(a)lists.bx.psu.edu
>>>>> http://lists.bx.psu.edu/listinfo/galaxy-dev
>>>>
>>> _______________________________________________
>>> galaxy-dev mailing list
>>> galaxy-dev(a)lists.bx.psu.edu
>>> http://lists.bx.psu.edu/listinfo/galaxy-dev
>>>
>>
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