Re: [galaxy-dev] Which version of GATK work with Galaxy?

On 11/29/2012 11:09 PM, Fenglou Mao wrote:

When I use an old version of GATK, it failed with a report "-nt" option was not supported, I guess old GATK does not support multi-threading. If I use a new version of GATK, it failed with a report "-et NO_ET" need a key file to work since new GATK force users to report usage unless we obtain a key file, but it seems no place for galaxy to specify the key file.

We are using GATK 1.4 with success. ftp://ftp.broadinstitute.org/pub/gsa/GenomeAnalysisTK/GenomeAnalysisTK-1.4.tar.bz2

Hope this helps, Mauro

Any help?

Thanks, Frank

---

Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:

http://lists.bx.psu.edu/