Hi, I just knew I was missing something crucial here ... Finally I found at the bottom of the Tools list (when you are in workflow editing mode) a section called 'Workflow control' having a single entry: 'Inputs'. Thought it could be useful to share my 'Aha-Erlebnis' :) Now it is perfectly possible to run a workflow using the CLI. Cheers, Marc
From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Marc Logghe Sent: Monday, April 01, 2013 11:25 PM To: Dannon Baker Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] REST API
Hi Dannon, Thanks for the reply.
From: Dannon Baker [mailto:dannon.baker@gmail.com] Sent: Monday, April 01, 2013 11:02 PM To: Marc Logghe Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] REST API
Hey Marc,
Yep, the '38' in this case is the step id shown just after "steps", but it would be an id listed in that 'inputs' dict. The inputs dictionary should be a list of all the "Input Dataset" steps for the workflow -- yours just doesn't have any and you'll need to add these to be able to map input datasets to the correct workflow input steps.
I am afraid I don't quite understand. In my case, the single step workflow accepts fasta as input. If you say that it is currently not possible to pass 'set-at-runtime' parameters how do you pass the fasta then ? I mean, what changes to the workflow need to be done in order to make it possible to pass a command line argument like '38=hda=03501d7626bd192f' ? I'am pretty much confused ... Think I keep on missing something crucial here. Regards, Marc ________________________________________ THIS E-MAIL MESSAGE IS INTENDED ONLY FOR THE USE OF THE INDIVIDUAL OR ENTITY TO WHICH IT IS ADDRESSED AND MAY CONTAIN INFORMATION THAT IS PRIVILEGED, CONFIDENTIAL AND EXEMPT FROM DISCLOSURE. If the reader of this E-mail message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please notify us immediately at ablynx@ablynx.com. Thank you for your co-operation. "NANOBODY" and "NANOCLONE" are registered trademarks of Ablynx N.V. ________________________________________ ________________________________________ THIS E-MAIL MESSAGE IS INTENDED ONLY FOR THE USE OF THE INDIVIDUAL OR ENTITY TO WHICH IT IS ADDRESSED AND MAY CONTAIN INFORMATION THAT IS PRIVILEGED, CONFIDENTIAL AND EXEMPT FROM DISCLOSURE. If the reader of this E-mail message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please notify us immediately at ablynx@ablynx.com. Thank you for your co-operation. "NANOBODY" and "NANOCLONE" are registered trademarks of Ablynx N.V. ________________________________________