Hi Ryan,
latest wrappers are here: https://github.com/galaxyproject/tools-devteam/tree/master/tools/bowtie2 And a PR would be great!
But as far as I can see this is already implemented and you can choose as option `Paired-end Dataset Collection`, isn't it?
Ciao, Bjoern
On 24.06.2015 20:02, Ryan G wrote:
Hi all - It looks like bowtie's wrapper is working incorrectly for a list of dataset pairs. Its expecting all the forward reads in one dataset list and the reverse reads in a separate dataset list.
Instead, I have a list of dataset pairs (for paired-end data). This cannot be provided to bowtie as input. If I correct this, should I create a pull request for it? Alternatively, does someone already have a corrected version of this?
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/