I am having difficulties with my local instance of Galaxy on Mac OS X. Upon using the local file upload tool I get an error resultant of a broken pipe in python.
The command-line output is as follows.
127.0.0.1 - - [25/Feb/2013:12:36:32 -0400] "GET /history HTTP/1.1" 500 - "http://localhost:8080/tool_runner/upload_async_message" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_2) AppleWebKit/536.26.17 (KHTML, like Gecko) Version/6.0.2 Safari/536.26.17" ---------------------------------------- Exception happened during processing of request from ('127.0.0.1', 50438) Traceback (most recent call last): File "/Users/jjevans/Work/Tools/Galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py", line 1068, in process_request_in_thread self.finish_request(request, client_address) File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/SocketServer.py", line 323, in finish_request self.RequestHandlerClass(request, client_address, self) File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/SocketServer.py", line 641, in __init__ self.finish() File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/SocketServer.py", line 694, in finish self.wfile.flush() File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/socket.py", line 303, in flush self._sock.sendall(view[write_offset:write_offset+buffer_size]) error: [Errno 32] Broken pipe ---------------------------------------- 127.0.0.1 - - [25/Feb/2013:12:36:34 -0400] "GET /api/histories/2a56795cad3c7db3 HTTP/1.1" 200 - "http://localhost:8080/history" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_2) AppleWebKit/536.26.17 (KHTML, like Gecko) Version/6.0.2 Safari/536.26.17" galaxy.jobs.manager DEBUG 2013-02-25 12:36:35,289 (77) Job assigned to handler 'upload_handler'
My instance has worked for this task in the past, but I'm not sure if it has been since my last Galaxy update or perhaps something with my configuration changed.
thanks for your help,
Jason