Dear Sir, Madam,
I am working on the integration of sartools_1_1_0 in our local galaxy instance. This tool can be found at: http://toolshed.france-bioinformatique.fr/repository
When we use deseq2 from this package, the temporary working directory located in the "job_working_directory" seems to be deleted too early, and so the "rsync" commands from "abims_sartools_deseq2_wrapper.py" script can't be executed because the files do not exist anymore.
Here is the error message:
rsync: change_dir "/work/galaxy-dev/database/job_working_directory/038/38633/figures" failed: No such file or directory (2) rsync error: some files/attrs were not transferred (see previous errors) (code 23) at main.c(1039) [sender=3.0.6] rsync: change_dir "/work/galaxy-dev/database/job_working_directory/038/38633/tables" failed: No such file or directory (2) rsync error: some files/attrs were not transferred (see previous errors) (code 23) at main.c(1039) [sender=3.0.6] rsync: link_stat "/work/galaxy-dev/database/job_working_directory/038/38633/Project.RData" failed: No such file or directory (2) rsync error: some files/attrs were not transferred (see previous errors) (code 23) at main.c(1039) [sender=3.0.6] rsync: link_stat "/work/galaxy-dev/database/job_working_directory/038/38633/Project_report.html" failed: No such file or directory (2) rsync error: some files/attrs were not transferred (see previous errors) (code 23) at main.c(1039) [sender=3.0.6]
Could you please help us on this problem?
Thank you very much in advance.
Best regards,
Sabrina
**Sabrina LEGOUEIX RODRIGUEZ** Responsable Plateau Bioinformatique
Tél. : +33 (0) 5 61 28 57 92 sabrina.legoueix@toulouse.inra.fr mailto:[MAIL] www.toulouse-white-biotechnology.com http://www.toulouse-white-biotechnology.com/
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