Dear all
My attempts to visualise a vcf file in trackster fail. I can visualise the corresponding SAM/BAM files fine. I can visualise the same file on Galaxy main too, but not in my local install.
I receive the following error message:
"Trackster Error Input error: found interval with block-counts not matching starts/sizes on line. sort: write failed: standard output: Broken pipe sort: write error needLargeMem: trying to allocate 0 bytes (limit: 100000000000)"
The vcf format is in version 4.1. I am creating it from the sorted BAM file with samtools mpileup in the most basic way.
What am I missing?
Thanks a lot for your help Ulf
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