GALAXY TOOL ERROR REPORT ------------------------
This error report was sent from the Galaxy instance hosted on the server "127.0.0.1:7070" ----------------------------------------------------------------------------- This is in reference to dataset id 13 from history id 6 ----------------------------------------------------------------------------- You should be able to view the history containing the related history item
13: FastQC_SC2T252P15_S1_L001_R1_001.fastq.html
by logging in as a Galaxy admin user to the Galaxy instance referenced above and pointing your browser to the following link.
127.0.0.1:7070/history/view?id=e03374982e5c9d8a ----------------------------------------------------------------------------- The user 'yaximik@gmail.com' provided the following information:
This was returned upon attempt to run FasQC on one Illumina gromed dataset.
Local galaxy install on RHEL58 ----------------------------------------------------------------------------- job id: 7 tool id: fastqc ----------------------------------------------------------------------------- job command line: python /home/galaxy/galaxy-dist/tools/rgenetics/rgFastQC.py -i "/home/GalaxyUpload/SC2T252P15_S1_L001_R1_001.fastq" -d "/home/galaxy/galaxy-dist/database/job_working_directory/000/7/dataset_13_files" -o "/home/galaxy/galaxy-dist/database/files/000/dataset_13.dat" -n "FastQC" -f "fastq" -j "SC2T252P15_S1_L001_R1_001.fastq" -e "/home/galaxy/galaxy-dist/tool-data/shared/jars/FastQC/fastqc" ----------------------------------------------------------------------------- job stderr: Traceback (most recent call last): File "/home/galaxy/galaxy-dist/tools/rgenetics/rgFastQC.py", line 158, in <module> assert os.path.isfile(opts.executable),'##rgFastQC.py error - cannot find executable %s' % opts.executable AssertionError: ##rgFastQC.py error - cannot find executable /home/galaxy/galaxy-dist/tool-data/shared/jars/FastQC/fastqc
----------------------------------------------------------------------------- job stdout:
----------------------------------------------------------------------------- job info: None ----------------------------------------------------------------------------- job traceback: None ----------------------------------------------------------------------------- (This is an automated message).