I have the following job_conf.xml file setup for our cluster: http://pastebin.com/raw.php?i=0uNhcVJk When running jobs from my admin account via Galaxy it runs under the same user as galaxy is, for testing, this as root. I need for it to run under the real user. The email address / galaxy account I am using to test with does match with a user on the cluster -- user@example.com where user is a valid user account with correct permissions to run jobs on our cluster and queue. I followed the information here: http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster#Submitting_Jo... Any ideas as to why galaxy_external* is not being called? The paster.log file does not show anything useful regarding calling external scripts. -- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/ University of California, Irvine www.ics.uci.edu/~aebrenne/ aebrenne@uci.edu