On Tue, Jan 22, 2013 at 4:43 PM, Carl Eberhard carlfeberhard@gmail.com wrote:
Short form: Both the API and client side should handle single datasets error-ing more gracefully than they did and the history panel should be more resilient and useful during and after a server error (at least of this kind).
Please let me know if you see more problems, C
I'm seeing some (apparently harmless) errors in the output during the 'upload' step when running Galaxy unit tests - in this case for one of my tools:
functional_tests.py INFO 2013-01-25 10:37:19,810 Functional tests will be run against localhost:9500 nose.plugins.manager DEBUG 2013-01-25 10:37:19,865 DefaultPluginManager load plugin sqlalchemy = sqlalchemy.test.noseplugin:NoseSQLAlchemy nose.plugins.manager DEBUG 2013-01-25 10:37:19,986 DefaultPluginManager load plugin nosetestdiff = nosetestdiff.plugin:NoseTestDiff nose.plugins.manager DEBUG 2013-01-25 10:37:19,989 DefaultPluginManager load plugin nosehtml = nosehtml.plugin:NoseHTML TMHMM 2.0 ( tmhmm2 ) > Test-1 ... galaxy.web.framework DEBUG 2013-01-25 10:37:20,366 Error: this request returned None from get_history(): http://localhost:9500/ galaxy.web.framework DEBUG 2013-01-25 10:37:20,425 Error: this request returned None from get_history(): http://localhost:9500/ galaxy.web.framework DEBUG 2013-01-25 10:37:20,676 Error: this request returned None from get_history(): http://localhost:9500/user/logout galaxy.web.framework DEBUG 2013-01-25 10:37:20,731 Error: this request returned None from get_history(): http://localhost:9500/ galaxy.tools.actions.upload_common INFO 2013-01-25 10:37:24,312 tool upload1 created job id 1 galaxy.jobs.manager DEBUG 2013-01-25 10:37:27,460 (1) Job assigned to handler 'main' galaxy.jobs DEBUG 2013-01-25 10:37:32,755 (1) Working directory for job is: /mnt/galaxy/galaxy-central/database/job_working_directory/000/1 galaxy.jobs.handler DEBUG 2013-01-25 10:37:32,755 dispatching job 1 to local runner galaxy.jobs.handler INFO 2013-01-25 10:37:33,041 (1) Job dispatched galaxy.jobs.runners.local DEBUG 2013-01-25 10:37:33,153 Local runner: starting job 1 galaxy.jobs.runners.local DEBUG 2013-01-25 10:37:33,712 executing: ...
Are these lines just false positives? Error: this request returned None from get_history(): http://localhost:9500/ Error: this request returned None from get_history(): http://localhost:9500/user/logout Error: this request returned None from get_history(): http://localhost:9500/
Thanks,
Peter