Hi Sarah, this problem has been fixed yesterday in release_16.04 and following with https://github.com/galaxyproject/galaxy/pull/2800 .
Cheers, Nicola
On 18/08/16 14:24, Sarah DIEHL wrote:
Dear all,
I just ran the liftOver tool that comes with Galaxy (https://github.com/galaxyproject/galaxy/blob/dev/tools/extract/liftOver_wrap...) and for the "mapped coordinates" output dataset the database shows as "<Cheetah.Template.Template object at 0x10adabd0>" (see attached screenshot). It seems that some of the code that determines the output database doesn't work anymore. This is the associated code in the xml:
<data format="input" name="out_file1" label="${tool.name} on ${on_string} [ MAPPED COORDINATES ]">
<actions>
<action type="metadata" name="dbkey"> <option type="from_data_table" name="liftOver" key="name"column="1" offset="0">
<filter type="param_value" column="0" value="#"compare="startswith" keep="False"/>
<filter type="param_value" ref="to_dbkey" column="2"/> </option> </action></actions>
</data>
Does someone have a clue how to fix this?
Thanks, Sarah
Sarah Diehl HPC System Administrator UNIVERSITÉ DU LUXEMBOURG LUXEMBOURG CENTRE FOR SYSTEMS BIOMEDICINE Campus Belval | Biotech II 6, avenue du Swing L-4371 Belvaux T +352 46 66 44 5360 sarah.diehl@uni.lu mailto:sarah.diehl@uni.luhttp://lcsb.uni.lu
http://lcsb.uni.lu/
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