Hello everyone
I have a lot of sequencing data that I wanted to load into one Galaxy data library. I enabled loading the data by filesystem path and successfully "linked to the files" rather than copying them into galaxy. Unfortunately, as I add more folders and data files, the library takes longer and longer to load. At this point, the apache proxy just times out before galaxy returns any data. Should I have more data libraries and fewer files within them? Is there a reason for not implementing paging in the data libraries?
The web server hosting galaxy shows only 80% loads 30473 galaxy 20 0 1070m 443m 5160 S 81.6 1.4 9:59.89 python
The database server is at 13% load (kind of low) 20890 mysql 20 0 3762m 551m 9104 S 13.4 0.9 796:16.69 /usr/sbin/mysqld --basedir=/usr --datadir=/var/lib/mysql --plugin-dir=/usr/lib64/mysql/plugin --user=mysql --log-bin=/var/log/mysql/bin.log --slow-query-log-file=/var/log/mysql/slow-queries.log
Regards, Iyad Kandalaft
Bioinformatics Application Developer Agriculture and Agri-Food Canada | Agriculture et Agroalimentaire Canada KW Neatby Bldg | éd. KW Neatby 960 Carling Ave| 960, avenue Carling Ottawa, ON | Ottawa (ON) K1A 0C6 E-mail Address / Adresse courriel: Iyad.Kandalaft@agr.gc.camailto:Iyad.Kandalaft@agr.gc.ca Telephone | Téléphone 613- 759-1228 Facsimile | Télécopieur 613-759-1701 Government of Canada | Gouvernement du Canada