We've processing several FASTQ files (Illumina, of course ;) ), and the
FASTQ-Groomer is running for 2.5 hours now.
The input files are ~4.5GB / 36nt .
Is any one else getting faster results ? maybe we're doing something
wrong that can be improved.
Is any one on the mailing-list have Illumina-capable versions of
TopHat/Cufflinks, ones that don't require grooming ?