Hi,
Another problem in the update I've applied. New jobs don't change state in the Galaxy interface, but they are being correctly farmed onto our cluster via DRMAA. THis is the output I get:
galaxy.jobs INFO 2010-11-12 16:02:43,029 job 2187 dispatched galaxy.jobs.runners.drmaa DEBUG 2010-11-12 16:02:43,836 (2187) submitting file /homes/www-galaxy/galaxy_devel/database/pbs/galaxy_2187.sh galaxy.jobs.runners.drmaa DEBUG 2010-11-12 16:02:43,836 (2187) command is: perl /homes/www-galaxy/local_tools_devel/bin/get_RNA_align.pl --rna hsa-mir-30a --num-reads 1 --expt smRNAHelaC --format text --order pos --out /homes/www-galaxy/galaxy_devel/database/files/002/dataset_2317.dat --noverbose galaxy.jobs.runners.drmaa INFO 2010-11-12 16:02:43,857 (2187) queued as 989766 galaxy.jobs.runners.drmaa DEBUG 2010-11-12 16:02:44,820 (2187/989766) state change: job is queued and active galaxy.jobs.runners.drmaa DEBUG 2010-11-12 16:02:46,824 (2187/989766) state change: job is running galaxy.jobs.runners.drmaa DEBUG 2010-11-12 16:02:48,121 (2187/989766) state change: process status cannot be determined galaxy.jobs.runners.drmaa DEBUG 2010-11-12 16:02:50,128 (2187/989766) state change: job finished normally galaxy.jobs DEBUG 2010-11-12 16:02:50,530 job 2187 ended
If I manually refresh the history panel then the grey history item goes green. Anyone else seen this behaviour? Thanks,
Chris