Dear Nicola,
now it looks like package_gnu_coreutils_8_22
is generating an error
gnu_coreutils http://129.69.102.42/admin_toolshed/manage_repository_tool_dependencies?repository_id=e4c0e60daf76dabb&operation=browse&tool_dependency_ids=e96c6ce43a3d239a 8.22 package Error Shutting down process id 23231 because it generated no output for the defined timeout period of 3600.0 seconds.
I didn't find anything an this error on the web and I am not sure how I can fix this...
cheers,
philipp
-----Original message----- From: Nicola Soranzo nsoranzo@tiscali.it Sent: Wednesday 23rd March 2016 12:49 To: Rathert, Philipp, Dr. philipp.rathert@ibc.uni-stuttgart.de; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] perl version 5.18.1 repository error
Hi Philipp, can you try to reinstall the tool dependency? Go to the Admin interface, "Manage installed tools", click on the "package_perl_xml_parser_expat_2_41", then from the "Repository Actions" menu select "Manage tool dependencies", select the dependency in error and "Uninstall", then select it again and "Install" it.
Cheers, Nicola
On 23/03/16 08:06, Rathert, Philipp, Dr. wrote: Dear all,
i am trying to install tool (meme-fimo) which needs package_perl_xml_parser_expat_2_41 that has a pearl 5.18.1 dependency.
however, although the tool installs just fine it shows that package_perl_xml_parser_expat_2_41 has missing dependencies:
Tool shed repository:package_perl_xml_parser_expat_2_41 Tool shed repository changeset revision:1ce3818a8eb9 Tool dependency status:Error Tool dependency installation error:Error installing tool dependency perl version 5.18.1: Unable to locate the repository directory for revision d905bb415eca of installed repository package_perl_5_18 owned by iuc. Tool dependency installation directory:././tool_deps/perl/5.18.1/iuc/package_perl_xml_parser_expat_2_41/1ce3818a8eb9
Is this an error of my local instance or is the revision missing on the toolshed?
Thank you very much for your help.
Cheers,
philipp
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