Hi Adam,
This is going to depend entirely on the tools you're using. I'd suggest running your typical workload and examining the I/O patterns to determine what makes the most sense. I'd think the temp directory, input dataset, and output dataset filesystems to be the most utilized.
--nate
On Fri, Feb 14, 2014 at 12:31 PM, Panzer, Adam Panzer_A@kids.wustl.eduwrote:
Hello All,
I recently was gifted an ioFusion ioFX acceleration card to help speed my bioinformatics work along and I am wondering how best to integrate it into my instance to make Galaxy more efficient. Is it sufficient to merely ensure that the datasets being operated on are on the flash storage (I guess by placing the main Galaxy directory there) or are there other elements that should also move lest they create bottlenecks elsewhere (tmp directory, files related to proxy/ftp server, tool shed, etc.)? Suggestions will be greatly appreciated.
Thanks, Adam
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