I've just updated via 'hg pull -u', ran the update to the database and went through the steps of enabling the visualization tab for viewing my bed and wig files. Yesterday there were a few aesthetic issue which seem to have been fixed with todays update. But, the tracks still fail to load for me at all. I've tried wig, bed, and (although its not supposed to work) bam files, because they are included in the selection box, so i figured i'd try...
I essentially just get "loading data". The job on the cluster for indexing seems to be running, but then when i go back to 'analyze' i notice the job in my history, reporting that the BED to Interval conversion failed "due to a cluster problem".
Any ideas are sincerely appreciated. Thanks in advance.
--Juan
When i try to run the conversion manually again, i get a slew of errors, summed up by:
UnicodeDecodeError: 'ascii' codec can't decode byte 0xff in position 1: ordinal not in range(128)
Full error output in txt:
URL: http://variome.chop.edu:8082/datasets/6a8910163e5b1d35/display/?preview=True... '/home/perin/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py', line 364 in respond app_iter = self.application(environ, detect_start_response) File '/home/perin/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py', line 98 in __call__ environ, self.app) File '/home/perin/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py', line 539 in intercept_output app_iter = application(environ, replacement_start_response) File '/home/perin/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__ return self.application(environ, start_response) File '/home/perin/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__ return self.application(environ, start_response) File '/home/perin/galaxy-dist/lib/galaxy/web/framework/base.py', line 134 in __call__ return body( environ, start_response ) File '/home/perin/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 630 in render template.render_context( context ) File '/home/perin/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/template.py', line 146 in render_context runtime._render_context(self, self.callable_, context, *args, **kwargs) File '/home/perin/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line 381 in _render_context _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) File '/home/perin/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line 414 in _exec_template callable_(context, *args, **kwargs) File '/home/perin/galaxy-dist/database/compiled_templates/base.mako.py', line 37 in render_body __M_writer(unicode(next.body())) File '/home/perin/galaxy-dist/eggs/Mako-0.2.5-py2.6.egg/mako/runtime.py', line 255 in <lambda> return lambda *args, **kwargs:callable_(self.context, *args, **kwargs) File '/home/perin/galaxy-dist/database/compiled_templates/dataset/ large_file.mako.py', line 43 in render_body __M_writer(filters.html_escape(unicode( truncated_data ))) UnicodeDecodeError: 'ascii' codec can't decode byte 0xff in position 1: ordinal not in range(128)