Hi Gildas,
the approach which Main Galaxy takes is as described by Nate in the exercise document linked by Laure. Exerpt here:
"In addition, you can gracefully restart the uWSGI Galaxy process with sudo supervisorctl signal HUP gx:galaxy. uWSGI is configured to start Galaxy in a "master" process and then fork the configured number of worker processes. Because of this, if sent a SIGHUP signal, it will kill the workers but the master process will hold its socket open, blocking client (browser) connections until new workers are forked. This prevents users from seeing a proxy error page during restarts."
Using this, you can restart both the uWSGI server and Galaxy handlers with:
$ sudo supervisorctl signal HUP gx:galaxy && sudo supervisorctl restart gx:handler0 gx:handler1
without supervisor it would be something like $ pkill -HUP -o -u <user> uwsgi
Thanks for using Galaxy,
Martin
On Wed, Nov 16, 2016 at 5:19 AM Laure QUINTRIC Laure.Quintric@ifremer.fr wrote:
Hi Gildas,
Have a look here : https://github.com/martenson/dagobah-training/tree/master/advanced/002a-syst...
See ya.
Laure
Le 14/11/2016 à 21:35, Gildas Le Corguillé a écrit :
Hi,
Since Galaxy need to be restarted sometime (load datatype, add ressources in .loc, apply changes in the galaxy.ini), is anybody of you have solutions to restart it without interrupt the service?
We are now using nginx, uwsgi and supervisord.
My hope is to split the Galaxy process in two group (1 uwsgi and 2 job handlers per group). That way, we will be able to restart the group1 and then the group2.
I was planning to set the 2 uwsgi servers and delegate the load balancing to ngnix (https://www.nginx.com/resources/admin-guide/load-balancer/) But maybe, some of you already implemented that and can provide me some advices or warnings.
The job handler part seems easier to deal with --server-name=handler1_%(process_num)s --server-name=handler2_%(process_num)s
Thanks by advance
Gildas
Gildas Le Corguillé - Bioinformatician/Bioanalyste
Plateform ABiMS (Analyses and Bioinformatics for Marine Science) http://abims.sb-roscoff.fr
Member of the Workflow4Metabolomics project http://workflow4metabolomics.org
Station Biologique de Roscoff - UPMC/CNRS - FR2424 Place Georges Teissier 29680 Roscoff FRANCE tel: +33 2 98 29 23 81 <+33%202%2098%2029%2023%2081>
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