Hi,
I interested in hosting a local toolshed. I was able to install it and add a tool to it. I have configured my local galaxy instance to pull tools from this local toolshed. As far as I can tell everything is working in the toolshed side of things, but when I try to install the tool I added I get this error:
URL: http://galaxydev.bfx.brel.local/admin_toolshed/prepare_for_install?tool_shed... File '/local/opt/galaxy/galaxy-dist.dev/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py', line 364 in respond app_iter = self.application(environ, detect_start_response) File '/local/opt/galaxy/galaxy-dist.dev/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py', line 98 in __call__ environ, self.app) File '/local/opt/galaxy/galaxy-dist.dev/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py', line 539 in intercept_output app_iter = application(environ, replacement_start_response) File '/local/opt/galaxy/galaxy-dist.dev/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__ return self.application(environ, start_response) File '/local/opt/galaxy/galaxy-dist.dev/lib/galaxy/web/framework/middleware/remoteuser.py', line 91 in __call__ return self.app( environ, start_response ) File '/local/opt/galaxy/galaxy-dist.dev/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__ return self.application(environ, start_response) File '/local/opt/galaxy/galaxy-dist.dev/lib/galaxy/web/framework/base.py', line 160 in __call__ body = method( trans, **kwargs ) File '/local/opt/galaxy/galaxy-dist.dev/lib/galaxy/web/framework/__init__.py', line 208 in decorator return func( self, trans, *args, **kwargs ) File '/local/opt/galaxy/galaxy-dist.dev/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 1177 in prepare_for_install response = urllib2.urlopen( url ) File '/usr/lib64/python2.6/urllib2.py', line 126 in urlopen return _opener.open(url, data, timeout) File '/usr/lib64/python2.6/urllib2.py', line 397 in open response = meth(req, response) File '/usr/lib64/python2.6/urllib2.py', line 510 in http_response 'http', request, response, code, msg, hdrs) File '/usr/lib64/python2.6/urllib2.py', line 435 in error return self._call_chain(*args) File '/usr/lib64/python2.6/urllib2.py', line 369 in _call_chain result = func(*args) File '/usr/lib64/python2.6/urllib2.py', line 518 in http_error_default raise HTTPError(req.get_full_url(), code, msg, hdrs, fp) HTTPError: HTTP Error 400: Bad Request
I can manually confirm this URL is incorrect: tool_shed_url=http://toolsheddev.bfx.brel.local:9009/&repository_ids=ee9b707789bf4714&...
When I try to directly access it I get this error: Not Found
The resource could not be found. No action for /&repository_ids=ee9b707789bf4714&changeset_revisions=71b062907e0d
I don't think is related but maybe I should mention it. I have to use a http proxy to access the web, so I have http_proxy environment variable set. This was causing issues with the local toolshed as my institution proxy won't respond for requests to local hostnames. The tool files would get uploaded but resetting the metadata would fail with: galaxy.util.shed_util_common DEBUG 2013-02-04 13:02:38,221 Resetting all metadata on repository: annotab galaxy.util.shed_util_common DEBUG 2013-02-04 13:02:38,271 Cloning repository revision: 0 galaxy.util.shed_util_common DEBUG 2013-02-04 13:02:38,276 Error cloning repository: HTTP Error 400: Bad Request galaxy.util.shed_util_common DEBUG 2013-02-04 13:02:38,326 Cloning repository revision: 1 galaxy.util.shed_util_common DEBUG 2013-02-04 13:02:38,329 Error cloning repository: HTTP Error 400: Bad Request galaxy.util.shed_util_common DEBUG 2013-02-04 13:02:38,377 Cloning repository revision: 2 galaxy.util.shed_util_common DEBUG 2013-02-04 13:02:38,380 Error cloning repository: HTTP Error 400: Bad Request
I was able to fix this issue by editing ~/.hgrc and adding: [http_proxy] no = toolshed.bfx.brel.local,toolsheddev.bfx.brel.local
I mention it just in case for some reason my issue could be related, although as I said I don't think so.
Any help would be most welcomed, Thanks, Carlos